Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03280 ATGGAGCATCATCCTCTCATCAACGACTGCACTTTCTCTTCTGCTAACCCATGTTTATCAGAAATTTGGCCTCACTTTCCATCTCAAAACAACAACAAAAGAAACAACTCTCTCTCAAACAATGACTCTGCCACTAAGCATATAAAACTAGCACTACCAGAAGATGATCACAACGCGGCGTTTAAACTCGAGCCTGATACAAATTCAGTAGAAAAACAACAACAGAATGTGAAGACTTCTTCTGAACAGCCACCACCACCGCCACCAAAGCAAGATTACATTCATGTTAGAGCCAGAAGAGGCCAAGCTACTGATAGTCACAGTCTCGCTGAAAGAGCAAGAAGAGAAAAAATTAGTGAAAGAATGAAAATTCTACAAGATTTAGTTCCAGGATGTAACAAGGTAATTGGTAAAGCACTTGTGCTTGATGAGATAATCAATTATATTCAATCACTACAACATCAAGTTGAGTTTCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGATTGAATATGCACTCTTCTGTTGATTGTTTCCCTTTAAAAGATGTTGGTGCTCAACCATCTGACCTTTCGGGAATAGTATTTGGATCGCAAGCAGGAAGGGGCTATGCTCAAGGATCACAGCCAGGATGGCTACATATGCAGCTAGCGGGTGGTTTAGATAAAACATCATAA 678 0.3968 MEHHPLINDCTFSSANPCLSEIWPHFPSQNNNKRNNSLSNNDSATKHIKLALPEDDHNAAFKLEPDTNSVEKQQQNVKTSSEQPPPPPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRLNMHSSVDCFPLKDVGAQPSDLSGIVFGSQAGRGYAQGSQPGWLHMQLAGGLDKTS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03280 225 Coils Coil 149 169 - -
Vifa4g03280 225 SMART finulus 108 158 IPR011598 GO:0046983
Vifa4g03280 225 Pfam Helix-loop-helix DNA-binding domain 106 153 IPR011598 GO:0046983
Vifa4g03280 225 FunFam Basic helix-loop-helix transcription factor 99 171 - -
Vifa4g03280 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 102 152 IPR011598 GO:0046983
Vifa4g03280 225 MobiDBLite consensus disorder prediction 62 93 - -
Vifa4g03280 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 171 IPR036638 GO:0046983
Vifa4g03280 225 CDD bHLH_AtBPE_like 92 175 - -
Vifa4g03280 225 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 33 195 IPR024097 GO:0006355
Vifa4g03280 225 Gene3D - 99 177 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03280 Vifa-Chr4 1026564731 1026565884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03280 80 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 60.959 2.51e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g03280 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03280 - - gmx:100799646 294.664