Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03277 ATGGCCTCCGATCTCACCAACCTCACCATCCCTCCTCGTCCTCCTTCTTTCCTTCCCCCAATTGATCCCTCCCCACAAGTCATCCACAGTAGGTCCCACTCCTTCGTCGGTCCCTCCCCTCGCCTCCCCCCTCCCTCCGACGACGACAACAACCTCTTCTTCCTCGACGAACTCGCTTCCGACTCCGACTCCGACTCCGATTCCGACGACCTAATCCAACAACCCTTCCAACACAAATTCGGACCCTCCGATTTCCAAATTCTCAAAGTCATAGGACAAGGTGCCTTTGGCAAGGTCTTCATGGTCAGAAGAAAAGGAGATTCAGATTCTTCTGACAATAACGGAATCTTCGCAATGAAGGTTATGAGGAAAGACAACATCATTAAGAAAAATCACGTTGATTATATGAAAGCAGAGAGAGATATTCTCACTAAAGTTCTTCATCCTTTCATCGTTCCTCTTCGCTACTCTTTCCAAACAAAGTCTAAATTATATTTGATTTTGGACTTTATTAATGGAGGACATCTCTTCTTTCAATTATGTCGACAAGCCATTTTTAGTGAGGATGAGGCAAGGATTTACACTGCTGAGATTGTATCGGCTGTTTCACATCTTCACAGCAAAGGAATTGTGCATCGGGATCTTAAACCTGAAAACATACTCATGGATTCTCATGGCCATGTGATGTTAACTGATTTTGGAATGTCGAAAGAGATTGATGAATCTGAGAGATCTAACTCTATGTGTGGGACTACAGAGTATATGGCTCCGGAAATTCTTTTAGGTAAAGGCCATAACAAAGATGCGGATTGGTGGAGTGTTGGTGTTCTCTTGTATGAAATGATTACCGGGAAGGCACCATTTATACATAATAACAGAAAGAAGCTACAGGAGAAAATTATCAAAGAGAAAATCAAACTTCCACCCTACCTTACCGGTGAAGCTCATTCTTTGCTCAAAGGATTGCTGCAAAAGGATCCGTCTACAAGGTTAGGCAGCGGGCCAAATGGAGATGAACAGATCAAAAATCATAAGTGGTTCAGGACAATCAATTGGAACAAATTGGAGGCAAGAGAGCTGCAACCAAAGTTTAAACCATCTGATGTGTCTGGAAAAGATTGCACGGCTAATTTTGATCGATGCTGGACGACGATGCCTCTTGAGGACTCTCCGGCATCAACTCCTACAGCAGGTGACCATTTTCAGGGCTATACTTATGTTGCACCAAATCCTTGGCTTTCTTCTAGATAA 1251 0.4365 MASDLTNLTIPPRPPSFLPPIDPSPQVIHSRSHSFVGPSPRLPPPSDDDNNLFFLDELASDSDSDSDSDDLIQQPFQHKFGPSDFQILKVIGQGAFGKVFMVRRKGDSDSSDNNGIFAMKVMRKDNIIKKNHVDYMKAERDILTKVLHPFIVPLRYSFQTKSKLYLILDFINGGHLFFQLCRQAIFSEDEARIYTAEIVSAVSHLHSKGIVHRDLKPENILMDSHGHVMLTDFGMSKEIDESERSNSMCGTTEYMAPEILLGKGHNKDADWWSVGVLLYEMITGKAPFIHNNRKKLQEKIIKEKIKLPPYLTGEAHSLLKGLLQKDPSTRLGSGPNGDEQIKNHKWFRTINWNKLEARELQPKFKPSDVSGKDCTANFDRCWTTMPLEDSPASTPTAGDHFQGYTYVAPNPWLSSR 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03277 416 PANTHER RIBOSOMAL PROTEIN S6 KINASE 63 410 - -
Vifa4g03277 416 SMART serkin_6 85 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03277 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vifa4g03277 416 SMART pkinase_C_6 348 408 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa4g03277 416 ProSiteProfiles AGC-kinase C-terminal domain profile. 348 416 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa4g03277 416 Gene3D Transferase(Phosphotransferase) domain 1 171 366 - -
Vifa4g03277 416 FunFam Non-specific serine/threonine protein kinase 83 194 - -
Vifa4g03277 416 Gene3D Phosphorylase Kinase; domain 1 83 391 - -
Vifa4g03277 416 FunFam Non-specific serine/threonine protein kinase 171 366 - -
Vifa4g03277 416 SUPERFAMILY Protein kinase-like (PK-like) 83 400 IPR011009 -
Vifa4g03277 416 ProSitePatterns Protein kinases ATP-binding region signature. 91 120 IPR017441 GO:0005524
Vifa4g03277 416 Pfam Protein kinase C terminal domain 369 406 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vifa4g03277 416 Pfam Protein kinase domain 85 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03277 416 ProSiteProfiles Protein kinase domain profile. 85 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03277 416 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03277 Vifa-Chr4 1025470573 1025472926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03277 25 409 AGC Kinase Gene Family AT3G08720 60.442 3.29e-176 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Vifa4g03277 Pkinase 2.2e-71 CL0016