Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03274 ATGTCTTCCGCCTCCCCCGCCGCCGTCTCCGGCGAATTCATGCTCTTCGGAGTTAGAGTTGTGGTTGATTCCATGAGAAAGAGTGTTAGCATGAACAATCTCTCACAGTACGAACAATCTCACGACAACAACAACAACAACAATATCAAGGACGATAATAATAAAGACGCTATCGCCGCCGGTTATGCCTCCGCTGACGACGCCGTTCCGATTAACTCCGTCAGGAACCGCGACCGCGAGCGTAAACGAGGAATTCCATGGACGGAGGAAGAGCACAAGCTGTTCTTGGTTGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGAGGAATCTCAAGAAACTATGTGAAAACAAGAACGCCGACGCAGGTTGCAAGTCATGCTCAGAAATACTTTCTCCGGCGAAGTAACCTCAATCGCCGTCGCCGTAGATCTAGTCTCTTTGATATCACCACCGACTCGGTGTCTGCAATTCCAATGGAGGAAGACCAGGTTAAGAATCAAGACAGTGTTTCACAAGTACAGCCCATGTGTCCTGCAGCCCCTGAAACTAGAAAAAGCAATGAATTTCCTTTTATGTCAGTATATCATTTGGGTGTTGGTGAGAGTCCAATGGAAGAACTCACTCTAGGACAAGGAAATGCGAAACAAAATTTCACAACCAATCTATTCCATCCAATTCCTTTTGTTGTTTCAGATCCTAAAGCTTCCACTGTCTCTGATATCACCTCTAGTTCAAGTTCATCTATTGAACCTCCAACACTCTCGCTTGGGCTTTCCTTCTCATCTGATCAAAGGAAGACATCATCAACACACTCAGCTTTACACGCAATGCCATGTTTCAACAACGGAGATAACATCATAAGCGTTGCTTAA 873 0.4559 MSSASPAAVSGEFMLFGVRVVVDSMRKSVSMNNLSQYEQSHDNNNNNNIKDDNNKDAIAAGYASADDAVPINSVRNRDRERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVSAIPMEEDQVKNQDSVSQVQPMCPAAPETRKSNEFPFMSVYHLGVGESPMEELTLGQGNAKQNFTTNLFHPIPFVVSDPKASTVSDITSSSSSSIEPPTLSLGLSFSSDQRKTSSTHSALHAMPCFNNGDNIISVA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03274 290 Gene3D - 85 137 - -
Vifa4g03274 290 Pfam Myb-like DNA-binding domain 86 131 IPR001005 -
Vifa4g03274 290 SUPERFAMILY Homeodomain-like 81 136 IPR009057 -
Vifa4g03274 290 ProSiteProfiles Myb-like domain profile. 79 131 IPR001005 -
Vifa4g03274 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 135 IPR017930 -
Vifa4g03274 290 PANTHER TRANSCRIPTION FACTOR KUA1 12 232 - -
Vifa4g03274 290 FunFam transcription factor MYB1R1 85 136 - -
Vifa4g03274 290 ProSiteProfiles SANT domain profile. 87 135 IPR017884 -
Vifa4g03274 290 SMART sant 83 133 IPR001005 -
Vifa4g03274 290 CDD SANT 86 131 IPR001005 -
Vifa4g03274 290 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 133 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03274 Vifa-Chr4 1025252090 1025253657 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa4g03274 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03274 - - psat:127073868 482.256