Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03261 ATGGCTTCTTCCTCAGATCCTCCTTCCTCCAGACACCACACCTACGATCGTAAACAAAAATCCCTCGGCCTCTTATGCACCAATTTCTTGAGCTTGTACAATCGAGACAACGTTCATTTAGTCGGTCTCGACGACGCTGCCGCCCGATTAGGTGTTGAGAGAAGACGGATCTATGATATTGTCAATGTTCTCGAGAGCATTGGGGTTCTTGCAAGAAAGGCCAAGAACCAATATACGTGGAAAGGGTTTGGGGCGATTCCTGTTGCTTTGCAGGAGCTCAAGGAAGAGGGTTTATGGAAGAATTTCAATTCACAAGAAGGTGTCAATGAGGATGTAAAGATATCGGATGAAGACGATGAGGAAGAATCGTATTCCCAACCCAATGGAAGTCAGAGTGAATCATTATCATTATCCCAAACCAATGGAAGTCAGAGTGACAGTCTGAACCCTAATTCTTGTTTTCCCAGATCTCTGAAAAATGATAGAAGAGAGAAATCTTTGGCGTTGCTTACTCAGAATTTTGTCAAGCTTTTTGTCTGCTCTAATCTGGAAATGATATCCCTTGATGATGCAGCGAGGTTGTTGCTTGGAGATGCATACAATTCATCAACAATGAGAACAAAAGTTAGACGCCTTTATGATATTGCTAATGTGCTAACCTCCATGAACCTTATTGAAAAGACGCATACCACTGATACACGAAAACCAGCATTCAGGTGGCTAGGCTTGAAAGGGAAGACATGGAATGAGGCATCGCTTTACAATTCAAGCCAAGAGTCTAAAAAGAGGGCATTTGGAAATGATGTCACAAACATTAGCTTCTCGAGGAATAGGACCGATTTGTTCATGGGCAGAGACTTCAGCCAGAATCTCAAGAAGCCAAAGCTGATGGAAAACGACAGCGAGCTTGGTCAGGAAGATAGAAAGCAGACTTCAACAAACTACCAATTTGGTCCTTTTGCTCCGGCCTTCGTTTCCAAATCCGGAACTTCTGAGAATACTAAAGCGAAGCAGGTGCATGATTGGGAGAGTCTAGCTACTGAACATTCCCCTCAGTATCAAAATCAAGCTTTGAAAGAACTTTACTCCCACTATATGGAAGCATGGAAATCTTGGTACTCTGAAGTTGCTGGCAAGAGGTCAACACAAGTTTTGTAA 1158 0.4301 MASSSDPPSSRHHTYDRKQKSLGLLCTNFLSLYNRDNVHLVGLDDAAARLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFGAIPVALQELKEEGLWKNFNSQEGVNEDVKISDEDDEEESYSQPNGSQSESLSLSQTNGSQSDSLNPNSCFPRSLKNDRREKSLALLTQNFVKLFVCSNLEMISLDDAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTWNEASLYNSSQESKKRAFGNDVTNISFSRNRTDLFMGRDFSQNLKKPKLMENDSELGQEDRKQTSTNYQFGPFAPAFVSKSGTSENTKAKQVHDWESLATEHSPQYQNQALKELYSHYMEAWKSWYSEVAGKRSTQVL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03261 385 Pfam E2F/DP family winged-helix DNA-binding domain 18 82 IPR003316 GO:0005667|GO:0006355
Vifa4g03261 385 Pfam E2F/DP family winged-helix DNA-binding domain 164 242 IPR003316 GO:0005667|GO:0006355
Vifa4g03261 385 PANTHER TRANSCRIPTION FACTOR E2F 7 354 IPR015633 GO:0000978|GO:0006357
Vifa4g03261 385 FunFam E2F transcription factor-like E2FE 157 244 - -
Vifa4g03261 385 MobiDBLite consensus disorder prediction 109 155 - -
Vifa4g03261 385 MobiDBLite consensus disorder prediction 125 155 - -
Vifa4g03261 385 SUPERFAMILY "Winged helix" DNA-binding domain 164 243 IPR036390 -
Vifa4g03261 385 SMART E2F_TDP_2 17 82 IPR003316 GO:0005667|GO:0006355
Vifa4g03261 385 SMART E2F_TDP_2 162 242 IPR003316 GO:0005667|GO:0006355
Vifa4g03261 385 Gene3D - 157 244 IPR036388 -
Vifa4g03261 385 Gene3D - 12 85 IPR036388 -
Vifa4g03261 385 SUPERFAMILY "Winged helix" DNA-binding domain 16 80 IPR036390 -
Vifa4g03261 385 FunFam E2F transcription factor 8 12 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03261 Vifa-Chr4 1022944193 1022946595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03261 12 376 E2F-DP Transcription Factor Family AT3G48160 55.914 3.76e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vifa4g03261 E2F_TDP 1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03261 K09391 - gmx:100795252 514.998