Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03252 ATGGAACTGAAACGCTATTTGTTGGAAAGTATTCCATTTGCAGCAATGGTGATTGTAGAGATTCTTGATGTTGGGTTGACCACATTGAGCAAAGCAGCCATGTCCACAAGAGGAATGAATCACTTTATCTTTGTTCTTTACTCCAATGCTCTTGCCACTTCCATTCTCCTCCCTTCTTCTTTCCTCATCAACAGGACAACAAGACCGCCACTGTCTTTCTCACTTCTTGTCAAATTCTTCCTCCTCGGCCTGGTCGGCATCACTATAATGCAGAATTGTGTATTCACTGGCATAAGCTACAGCTCTCCCACCCTTGGATCTGCTATGAGCAACTTGACTCCAGCAATCACTTTTGTTCTAGCTGTCATTTTCAGGATGGAAAAGTTGGATGTTGGAAGTTCAATAAGCCAGATCAAAATGGTGGGGACAGTACTGTCTATCTCAGGAGCATTGCTAGTGACCCTTTACAAAGGCGCTCCCATTTGCAGCTTTCAAACTCAACCCTCGACGTCGCAAGAATTTCAGTCTCTATTAGAAGAAACCAGCAACTGGGTCATTGGAGGTCTCTTTCTATTCACTGCCTCTTTATCTCTTTCCATATGGAACATTGCTCAGGCAGCAATTCTTAGAGGATATCCATCTCAGTTGACCATAGTGGCATTCTATTGCCTGTTTGGAACAATGCAATGTGCAGTACTTTCTCTAATTGCAGTCAAAGATCGAAATGCTTGGAATCTCAGTGCTGATATTGAGCTTATCTCTATAATATATTCAGCAGTTTTTGGAAGTGTGGTGACATTTTCTGTACTGACTTGGTGCATAGATAGGAAAGGACCTGTATTTGTTTGCATGTTCAAACCTGTAGGAATTGCCATTGCTGCTTTTATGAGTGCTGCCTTCCTTGGTGAAACACTTCATGTTGGCAGTGTCATGGGAGCAGTGGTAATAGCCATTGGATTTTACACAGTTATGTGGGCACAATCAAAAGAGGGAAATGTGAATGGCCTAGAAGTTGATGGATCATTATCATCCTCATCTGCCGAAGAGAGTCCTCTACTAGGGTCTCAGTGA 1071 0.4276 MELKRYLLESIPFAAMVIVEILDVGLTTLSKAAMSTRGMNHFIFVLYSNALATSILLPSSFLINRTTRPPLSFSLLVKFFLLGLVGITIMQNCVFTGISYSSPTLGSAMSNLTPAITFVLAVIFRMEKLDVGSSISQIKMVGTVLSISGALLVTLYKGAPICSFQTQPSTSQEFQSLLEETSNWVIGGLFLFTASLSLSIWNIAQAAILRGYPSQLTIVAFYCLFGTMQCAVLSLIAVKDRNAWNLSADIELISIIYSAVFGSVVTFSVLTWCIDRKGPVFVCMFKPVGIAIAAFMSAAFLGETLHVGSVMGAVVIAIGFYTVMWAQSKEGNVNGLEVDGSLSSSSAEESPLLGSQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03252 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 157 - -
Vifa4g03252 356 Pfam EamA-like transporter family 26 154 IPR000620 GO:0016020
Vifa4g03252 356 Pfam EamA-like transporter family 186 324 IPR000620 GO:0016020
Vifa4g03252 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 253 329 - -
Vifa4g03252 356 PANTHER WAT1-RELATED PROTEIN 12 331 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03252 Vifa-Chr4 1020442125 1020443750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03252 4 353 Nodulin-like Gene Family AT5G40240 45.634 6.48e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03252 - - psat:127073896 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04733 1 740579079 740580017 Vifa4g03252 4 1020442125 1020443750 ECH
Vifa2g01769 2 456647210 456649588 Vifa4g03252 4 1020442125 1020443750 ECH
Vifa4g03252 4 1020442125 1020443750 Vifa4g03252 4 1020442125 1020443750 ECH