Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03250 ATGTTCTTATTACAAAATCTGCATAAAGAACATACATTTTTTTATGCTTCTTTTCTTAGAAACACACTGTCTCAAATGGCAGCATCTCCATCTCCTCAATCACCTCTTGCGTCGCAAACGATTAACGACAGAAATATTAGTACTGCGAAAGAAACAACAACTTCTTCACCCATAAGCAAAATGAGTCCACTTATTTTGTTAGTTATAATAGTATTAGCAATCATCTTTTTTCTCTATGGACTTGTCCAGTTAGTTTTATGGTTACTGATGAAAAGGCCATCCTCTTCATCTCATTATAATTCCAACAGATTCCAAGAATCGACCCGAACGCGATCTCTTCAGAGGCAACTACAACACCTATTCCACTTGCATGATTCAGGTCTTGACCAAGCTTTCATAAACACTCTTCCTGTTTTCAACTACCAAGATTTATTGGGTTTGAAGGAACCTTTTGATTGTGCTGTGTGTCTCTGTGAGTTTTCTGAACAGGATAAGCTGAGATTGGTTCCAATATGCAGCCATGCATTTCATATGAATTGTATTGACACATGGCTTCTCTCAAATTCTACTTGTCCTCTTTGTAGAGCAAATATCTCTAACAATAGTTTCCCTTTGGAGAATGTTAACGTTGTTGAGGATTCTTTGGTTCTGTCACATAGGTTCAATGTCAATGGTGATAAAGAGAATATTATTGAGGAACAAATAGGTGACAAAAGGGTGTTTTCTGTGAAGCTTGGAAAATTCAGAAGTAATGGATTGGAGGATGGTAGTACTAGTAGTTATAGTTTGGATGAAAGGAGATGTTATTCAATGGGTTCATATCAGTATGTGTTTTGTGATTCAAATTTGCAAGTGGTTTTGTCTCAATCTTGTTGTGAAGATGAAAATGGTAATGTGGAGGGGAAGAGGATAGGGAGTAGAATCAAAGGTGAGAGTTTTTCTGTTTCTAAGATATGGCTTTGGTCTAAGAAGAGCAAGTTTCCTAGTTCTAATACTGTTTTTCCTTGA 1008 0.3651 MFLLQNLHKEHTFFYASFLRNTLSQMAASPSPQSPLASQTINDRNISTAKETTTSSPISKMSPLILLVIIVLAIIFFLYGLVQLVLWLLMKRPSSSSHYNSNRFQESTRTRSLQRQLQHLFHLHDSGLDQAFINTLPVFNYQDLLGLKEPFDCAVCLCEFSEQDKLRLVPICSHAFHMNCIDTWLLSNSTCPLCRANISNNSFPLENVNVVEDSLVLSHRFNVNGDKENIIEEQIGDKRVFSVKLGKFRSNGLEDGSTSSYSLDERRCYSMGSYQYVFCDSNLQVVLSQSCCEDENGNVEGKRIGSRIKGESFSVSKIWLWSKKSKFPSSNTVFP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03250 335 FunFam E3 ubiquitin-protein ligase ATL6 115 201 - -
Vifa4g03250 335 Pfam Ring finger domain 152 195 IPR001841 -
Vifa4g03250 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 203 IPR013083 -
Vifa4g03250 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 57 319 - -
Vifa4g03250 335 SUPERFAMILY RING/U-box 132 201 - -
Vifa4g03250 335 SMART ring_2 153 194 IPR001841 -
Vifa4g03250 335 CDD RING-H2_EL5-like 152 195 - -
Vifa4g03250 335 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03250 Vifa-Chr4 1019514496 1019515503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03250 52 326 C3H Transcription Factor Family AT2G18650 39.701 4.85e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03250 - - mtr:11408711 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03250 4 1019514496 1019515503 Vifa4g03250 4 1019514496 1019515503 ECH