Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03244 ATGGCAGCTCGCTCACTTTCCTGTTTGCTCTCTCGCTCCCTATCTTCTTCTTCTGGAGCTGCTGCTTCTCTGCTTCGCTCACCACTAGGAAGAAAATCTGAAGGGTTGAGAAACACAAGTAGATTTAGCACCGCTGCAGCTGTTGAGGAATTGATTACTCCACAAGTTTCAATAAATTATACACAGCATCTCATAAATGGCAAATTTGTAGATGCTGCATCAGGGAAAACATTTCCAACTTATGACCCGCGCACAGGAGAAGTGATTGCTCAGGTAGCTGAAGGCGATGCTGAAGATATTAACCGTGCTGTATCAGCAGCTCGTGAGGCTTTTGATAATGGACCTTGGCCTAAAATGACTGCTTATGAAAGAAGTCGTATATTGTTACGCTTTGCTGATTTGGTTGAGAAGCATAATGATGAGATTGCAGCTCTAGAGTCATGGAACAATGGAAAGCTTTATGATCAGGCTGCCAAGACTGAAGTACCTATGTTTGTGCGTTTATTTCGCTATTATGCTGGGTGGGCAGATAAAATTCATGGGATGACAGTCCCCGCTGATGGAGATTACCATGTCCAGACATTGCATGAACCAATTGGTGTAGCAGGACAAATTATACCTTGGAATTTTCCTATACTTATGTTTGCTTGGAAAGTTGGACCAGCGCTAGCATGTGGTAATACCATTGTCCTGAAGACTTCTGAGCAAACACCGCTAACGGCTCTCATCGTGGCGAAACTACTTCATGAGGCTGGTCTTCCCCCAGGTGTTCTGAATATAGTTTCTGGCTACGGTCCAATTGCTGGTGCACCTCTTGCAAGTCATATGGATGTGGATAAGTTAGCATTTACTGGATCGACGGATACCGGAAAAACTGTACTTCAACTGGCTGCGAGAAGCAACCTTAAGACCGTGACATTGGAACTTGGAGGAAAATCCCCTTTCATTATATGTGAGGATGCTGATGTTGACAAGGCTGTTGAAAGTGCTCACTTTGCTCTATTTTTTAACCAGGGGCAATGTTGTTGTGCTGGATCCCGTACCTTTGTACATGAGCGTATCTACGACGAGTTCTTGGAGAAAGCGAAGGCGCGGGCTTTGAGACGTGTTGTTGGTGATCCATTTAAGAAGGGTGTAGAACAAGGTCCTCAGATTGATTCGAAACAATTCGAGAAAGTACTTCGGTATATAAAGTCTGGAATTGATAGCAATGCTACTCTGGAATGTGGAGGTGGGAGATTGGGCTCAAAAGGCTTCTTTGTCCAACCAACAGTATTCTCAAATGTTCAGGATGATATGTTGATAGCAACAGATGAAATCTTTGGGCCAGTTCAGTCTATCTTGAAGTTTAGGGACATTGATGAAGTGATAAGACGGGCAAATGCGACGCGTTATGGTTTAGCGGCAGGTGTTTTCACAAAGAATTTGAGCACAGCCAATACCTTGATGCGGGCACTGAGAGCTGGAACAGTGTGGATTAATTGCTTTGATGTTTTTGATGCTGCAATTCCTTTTGGTGGTTACAAGATGAGTGGGAATGGTAGGGAGAAAGGAATCTATAGTCTTAACAACTATCTGCAGGTAAAAGCTGTGGTGTCTCCATTGAAGAATCCTGCGTGGTTGTAG 1626 0.4397 MAARSLSCLLSRSLSSSSGAAASLLRSPLGRKSEGLRNTSRFSTAAAVEELITPQVSINYTQHLINGKFVDAASGKTFPTYDPRTGEVIAQVAEGDAEDINRAVSAAREAFDNGPWPKMTAYERSRILLRFADLVEKHNDEIAALESWNNGKLYDQAAKTEVPMFVRLFRYYAGWADKIHGMTVPADGDYHVQTLHEPIGVAGQIIPWNFPILMFAWKVGPALACGNTIVLKTSEQTPLTALIVAKLLHEAGLPPGVLNIVSGYGPIAGAPLASHMDVDKLAFTGSTDTGKTVLQLAARSNLKTVTLELGGKSPFIICEDADVDKAVESAHFALFFNQGQCCCAGSRTFVHERIYDEFLEKAKARALRRVVGDPFKKGVEQGPQIDSKQFEKVLRYIKSGIDSNATLECGGGRLGSKGFFVQPTVFSNVQDDMLIATDEIFGPVQSILKFRDIDEVIRRANATRYGLAAGVFTKNLSTANTLMRALRAGTVWINCFDVFDAAIPFGGYKMSGNGREKGIYSLNNYLQVKAVVSPLKNPAWL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03244 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 75 531 IPR016162 GO:0016491
Vifa4g03244 541 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 335 346 IPR016160 GO:0016491
Vifa4g03244 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 502 IPR016163 GO:0016620
Vifa4g03244 541 Pfam Aldehyde dehydrogenase family 69 531 IPR015590 GO:0016491
Vifa4g03244 541 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 65 323 - -
Vifa4g03244 541 CDD ALDH_F2BC 58 532 - -
Vifa4g03244 541 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 45 531 - -
Vifa4g03244 541 FunFam Mitochondrial aldehyde dehydrogenase 2 313 502 - -
Vifa4g03244 541 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 307 314 IPR029510 GO:0016491
Vifa4g03244 541 SUPERFAMILY ALDH-like 55 534 IPR016161 GO:0016491
Vifa4g03244 541 FunFam Aldehyde dehydrogenase, putative 503 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03244 Vifa-Chr4 1018755083 1018758469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03244 1 541 Aldehyde Dehydrogenase Gene Family AT3G48000 77.860 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03244 K00128 - gmx:100811501 919.457