Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03243 ATGAATACTCATCTTTCTAATCATAGGGATCGCCGCATCCTATCATTCCCGGCGGTTCATCCTTGCGAGGGAATATCCACCGCAACACTCGTCGCTTCTCTAATCACTCTCTCGCAAACCATATGCAATTTCCAACCTCAAATATTCCCAACCCAAAAACGTAACGCAAGAGAAACAATACGTCAAATTTCCATCATTTCAATATTCCTCCACGAAATTCAACACAATTGTTCCATAATCCCAAACTCAAACTCAATTATCATCTCTTTCTCAGAGCTTCACTTCACTTTACAAAAGATTCATTTCTTAATGCAAGATTGTACTCTTGAAGGTGCTAATCTTTTATTACTCTCGAAATCCCGACACGTGGCGGATCAATTTTGCTCTCTTATTCGCGCCGTTGCAACTACCGTAGACGTTTTGCCTTTACACAGAATCCAAATTTGCGAGGAAGTGAAGGAGTTAGTAGAGTTAGTAGCAAAACAAGCGAGGAAAGCTAAATTCGAAGTGGACCTCAGCGACGAGATTGCGACGAAAAAACTTTATTCAATTCTGCATCAATTCGAGAGAGGAACCGAACCTAATGTTCATATCATGCAGGAGATTCTCGATTACTTAAAAATCAATAGCTGGAATGATTGCAACAGAGAAATCAAATTCATAGAAAACGAGATAAGTTTATTAGAGAACCGTGACTGCAACCAACGTGAAATTCCATTGTTGAGTAGCTTGGTTGGATTTTTAAGCTACTGTAGGGTAGTGATATTCGAATTCGAATCACTGGATCAAAATTCAGATCAATACGAAGCTCGAATCAGCACGGAGATGATATCTATAACATGTTTGAATCCAGATGATTTTCGTTGTCCAATTTCACTCGAACTAATGACAGAACCAGTAACAGTTTCAACCGGACAAACCTATGACCGTGCTTCAATTCATAAATGGTTGAAAGCAGGTAACAGAACATGTCCCAAAACAGGTGAGAATCTGAACACCACAGAGTTAGTCCCAAACACAACCTTAAAGAAGCTTATCCAACAATTCTGCACCGACAACGGAGTTTCATTTTCCAAATCATGTAACCGCAACCGTGATATAACCAAAACAATTTCGCCAGGTAGTTCTGCAGCAGCACACGCTATGCAGTTTCTGTCATGGTTTCTCACACGAAGGCTTGTCTTCGGAACAGAGAAACAGAAGAACAAAGCAGCTTACGAGATTCGTTTGTTAACTAGGTCAAGTATTTTCAACAGAGCGTGTTTGATTGAAGTAGGAACAGTGCCGCCATTGTTGGAGCTTTTAGCCACGGAAGATAAAACGACGCAAGAGAATGCAGTTTCTGCTTTGATGAAGCTTTCAAAGCATGCTAACGGGCCTGAAAATATAATGGGCCATAACGGTTTAAAGCCCATTATATCAGTACTTAAAAATGGGCTTAGTCTTGAGGCCCAACAAATTGCAGCAGCTATAATATTCTATCTTTGTTCAGTGAAAGAATACAGAAAATCAATAGGTGAAAATCAAGACGCGATTCCGTGTTTAGTGGAGTTAGTTAAACAAGGAACAACCTACGGGAAAAAGAACGCTGTTGTTGCGATTTTTGGACTTCTTTTACTTCCGAGGAATCACCAACGCGTGATTGAAGCCGGTGCTGTTCACGCGCTTGTTTCTATTTTAGATCCTTCGTATAAAGAGGAGCTTGTTACCGAAGCTTTGGCTGTTATTGCGGCGCTGGCTGAGAATTTTGATGGAGCCAACGCTGTTTTGGAAGCTTCGGCGTTGCCGTTAATTACCGGGATGTTGCGATCTGTTACTTCGCGTGCTGGGAAGGAACACTGTGCTTCAATTTTGTTGTCGCTTTGTGTTAATGTTGGTGTGGACGTTGTTGGTGTTCTTTCTAAGGATATTACGCTTATGCCCTTGCTTTATTCGCTTCTTACCGATGGTACTGCTCATGCTGCTAAAAAAGCGCGTTTTCTCATTAAGATTCTACAGGATTTTAATGAAACAGCGTGTTCTAGATTGAAAGGCTCTTCAGTTTTGCGTCAATTGAATGGTTTGAATGGTGGGTTAGAATTTTGA 2085 0.4086 MNTHLSNHRDRRILSFPAVHPCEGISTATLVASLITLSQTICNFQPQIFPTQKRNARETIRQISIISIFLHEIQHNCSIIPNSNSIIISFSELHFTLQKIHFLMQDCTLEGANLLLLSKSRHVADQFCSLIRAVATTVDVLPLHRIQICEEVKELVELVAKQARKAKFEVDLSDEIATKKLYSILHQFERGTEPNVHIMQEILDYLKINSWNDCNREIKFIENEISLLENRDCNQREIPLLSSLVGFLSYCRVVIFEFESLDQNSDQYEARISTEMISITCLNPDDFRCPISLELMTEPVTVSTGQTYDRASIHKWLKAGNRTCPKTGENLNTTELVPNTTLKKLIQQFCTDNGVSFSKSCNRNRDITKTISPGSSAAAHAMQFLSWFLTRRLVFGTEKQKNKAAYEIRLLTRSSIFNRACLIEVGTVPPLLELLATEDKTTQENAVSALMKLSKHANGPENIMGHNGLKPIISVLKNGLSLEAQQIAAAIIFYLCSVKEYRKSIGENQDAIPCLVELVKQGTTYGKKNAVVAIFGLLLLPRNHQRVIEAGAVHALVSILDPSYKEELVTEALAVIAALAENFDGANAVLEASALPLITGMLRSVTSRAGKEHCASILLSLCVNVGVDVVGVLSKDITLMPLLYSLLTDGTAHAAKKARFLIKILQDFNETACSRLKGSSVLRQLNGLNGGLEF 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03243 694 CDD RING-Ubox_PUB 284 336 IPR045210 -
Vifa4g03243 694 SMART arm_5 414 455 IPR000225 GO:0005515
Vifa4g03243 694 SMART arm_5 540 581 IPR000225 GO:0005515
Vifa4g03243 694 SMART arm_5 456 497 IPR000225 GO:0005515
Vifa4g03243 694 FunFam RING-type E3 ubiquitin transferase 363 676 - -
Vifa4g03243 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 357 IPR013083 -
Vifa4g03243 694 FunFam RING-type E3 ubiquitin transferase 283 355 - -
Vifa4g03243 694 Coils Coil 211 231 - -
Vifa4g03243 694 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Vifa4g03243 694 SUPERFAMILY RING/U-box 284 357 - -
Vifa4g03243 694 Pfam U-box domain 284 353 IPR003613 GO:0004842|GO:0016567
Vifa4g03243 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 551 594 IPR000225 GO:0005515
Vifa4g03243 694 Gene3D - 375 688 IPR011989 -
Vifa4g03243 694 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Vifa4g03243 694 PANTHER U BOX DOMAIN-CONTAINING 68 665 - -
Vifa4g03243 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Vifa4g03243 694 SUPERFAMILY ARM repeat 396 671 IPR016024 -
Vifa4g03243 694 Pfam Armadillo/beta-catenin-like repeat 418 450 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03243 Vifa-Chr4 1018248824 1018250908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03243 4 670 U-box Gene Family AT1G60190 40.325 2.20e-164 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03243 - - tpra:123884536 1058.51