Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03241 ATGAAGGAAAGCAGTGATGGATTTGTTAGAGCGGATCAGATTGATCTGAAAAGCATAGATGAACAGCTTGAGAGACATCTCAACAAAGTGTTGACTATTGACAAGAAAAAGCGCGTTGAAGTTGAAGATTCTACTGCTTCTAATGTTTTTGATCATGCTCGAGTTCATACCAGTAGCGCTGGTAATTCTCCTGTCAAGTTCAAAACCAACTTCAAGAAGCAGAAGCAGGATTGGGAAATTGATCCTTCTAAGCTTATTATCAAAAGTGTTATTGCTCGGGGTACTTTTGGGACTGTTCATCGTGGTGTCTATGATACTCAAGATGTTGCTGTTAAACTGCTTGATTGGGGTGAAGAAGGCCAAAGGACAGAAGCTGAAGTTTCTTCACTGAGGGCAGCGTTTATACAGGAAGTTGCTGTTTGGCATAAACTTGATCATCCCAATGTCACAAAGTTTATAGGGGCAACTATGGGATCTGCAGAATTGCAGATACAAACTGATACCGGTCTAATTGGCATGCCCAGCAATGTCTGCTGTGTTGTCGTGGAGTATCTTGCTGGAGGTACTCTGAAATCATACCTGATAAAAAACAGGAGGAGGAAATTAGCTTTTAAAGTTGTCATTCAGCTGGCACTTGATTTAGCAAGAGGGCTGAGTTATCTTCACTCTCAGAAGATTGTCCACAGAGACGTGAAGACAGAAAACATGCTTCTGGATAAGACTCGCACAGTGAAAATTGCTGATTTTGGTGTTGCACGAGTCGAGGCATCAAATCCTAATGATATGACTGGGGAGACTGGAACTCTTGGTTATATGGCTCCTGAGGTTTTAAATGGAAACCCCTACAATAGGAAATGTGACGTGTACAGTTTTGGAATCTGTTTATGGGAGACATATTGTTGTGACATGCCATATCCCGATCTAAGTTTCTCAGAAATTACTTCAGCTGTTGTCCGCCAGAATTTGAGACCAGAAATGCCAAGATGCTGTCCAAGTTCTCTTGCAAATGTAATGAGGAAATGCTGGGATGCCAGTCCTGATAAGCGGCCAGAGATGGAGGAGGTTGTCTCCATGCTGGAAGCCATCGACACATCCAAAGGTGGAGGCATGATCCCTGGTGATCAGCAGCAGGGTTGTTTATGCTTCCGCAAGCATAGAGGGCCATGA 1167 0.4327 MKESSDGFVRADQIDLKSIDEQLERHLNKVLTIDKKKRVEVEDSTASNVFDHARVHTSSAGNSPVKFKTNFKKQKQDWEIDPSKLIIKSVIARGTFGTVHRGVYDTQDVAVKLLDWGEEGQRTEAEVSSLRAAFIQEVAVWHKLDHPNVTKFIGATMGSAELQIQTDTGLIGMPSNVCCVVVEYLAGGTLKSYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWETYCCDMPYPDLSFSEITSAVVRQNLRPEMPRCCPSSLANVMRKCWDASPDKRPEMEEVVSMLEAIDTSKGGGMIPGDQQQGCLCFRKHRGP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03241 388 PIRSF ILK 18 368 - -
Vifa4g03241 388 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 63 362 - -
Vifa4g03241 388 PRINTS Tyrosine kinase catalytic domain signature 220 238 IPR001245 GO:0004672|GO:0006468
Vifa4g03241 388 PRINTS Tyrosine kinase catalytic domain signature 330 352 IPR001245 GO:0004672|GO:0006468
Vifa4g03241 388 PRINTS Tyrosine kinase catalytic domain signature 286 308 IPR001245 GO:0004672|GO:0006468
Vifa4g03241 388 PRINTS Tyrosine kinase catalytic domain signature 182 195 IPR001245 GO:0004672|GO:0006468
Vifa4g03241 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Vifa4g03241 388 Gene3D Phosphorylase Kinase; domain 1 65 168 - -
Vifa4g03241 388 CDD STKc_MAP3K-like 91 359 - -
Vifa4g03241 388 FunFam Serine/threonine-protein kinase HT1 185 370 - -
Vifa4g03241 388 Gene3D Transferase(Phosphotransferase) domain 1 186 375 - -
Vifa4g03241 388 SUPERFAMILY Protein kinase-like (PK-like) 62 359 IPR011009 -
Vifa4g03241 388 FunFam Kinase suppressor of Ras 1 74 168 - -
Vifa4g03241 388 Pfam Protein tyrosine and serine/threonine kinase 87 359 IPR001245 GO:0004672|GO:0006468
Vifa4g03241 388 SMART serkin_6 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03241 388 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03241 Vifa-Chr4 1018123838 1018129713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03241 1 320 MAP Kinase Kinase Kinase AT5G50000 78.086 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa4g03241 PK_Tyr_Ser-Thr 6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03241 - - gmx:100807921 706.057