Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03234 ATGAAGAATTTGCATTGGTTGAAAGAGTTTTCTAACAATGTGAGGACAGCTATTAAGGGAAATGAAAAAGATGATTGGAATGCTGATTTGTCTCAGTTGTTTATTGGTTCCAAATTTGATTCTGGGAGACATAGCAGGATCTATAGAGGTTTATACAAGAACATTGATGTGGCTATTAAGCTTGTGAGTCAACCTGAGGAGGATGAGGAATTGGCTGCTTTGCTTGAGAGACAATTTACTTCTGAGGTTGCTTTGTTGTTTCGATTGCGCCATCCCAATATTATTACTTTTGTTGGAGCATGCAAGAAACCACCAGTGTTCTGTATAATCACTGAATATATGGCTGGAGGCTCATTGAGAAAGTACCTACAACAACAAGGACCGCATTCAGTTCCTCCGAAAGTGGTTCTTGAGTTAGCCCTTGATATTGCAAGGGGGATGCAATATCTTCATTCTCAAGGAATACTTCATAGGGATCTCAAATCAGAAAATCTGCTGTTGGATGAAGATATGTGTGTAAAAGTAGCCGATTTTGGGATCTCGTGCTTAGAATCTCAAACCGGTAGCACAAAAGGATTCACTGGAACTTACCGTTGGATGGCGCCTGAAATGATCAGAGAAAAGCGTCATACAAAGAAAGTAGATGTCTATAGTTTTGCCATAGTTCTATGGGAGCTAATAACAGGACTCACGCCATTTGATAACATGACACCAGAACAGGCAGCATATGCAGTAACTCACAAGAATGCAAGGCCTCCATTACCATCTGATTGTCCAATGGCATTTAGTCATCTGATAAAGAAGTGTTGGTCAAGCAATCCAAATAAACGGCCACATTTTGTTGAGATAGTCTCAAATTTGGAGAGATATACAGATTCACTCGAGCAGGATCCTGAATTTTTCTCTACCTACAAACCAAGTCCTAGTAATGTACTTGTGAAGTGCTTACCAAATTGTAATGCTGGCTTAGAAGTTAGGACTCTCTTTTAA 990 0.397 MKNLHWLKEFSNNVRTAIKGNEKDDWNADLSQLFIGSKFDSGRHSRIYRGLYKNIDVAIKLVSQPEEDEELAALLERQFTSEVALLFRLRHPNIITFVGACKKPPVFCIITEYMAGGSLRKYLQQQGPHSVPPKVVLELALDIARGMQYLHSQGILHRDLKSENLLLDEDMCVKVADFGISCLESQTGSTKGFTGTYRWMAPEMIREKRHTKKVDVYSFAIVLWELITGLTPFDNMTPEQAAYAVTHKNARPPLPSDCPMAFSHLIKKCWSSNPNKRPHFVEIVSNLERYTDSLEQDPEFFSTYKPSPSNVLVKCLPNCNAGLEVRTLF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03234 329 CDD STKc_MAP3K-like 41 287 - -
Vifa4g03234 329 SMART serkin_6 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03234 329 Gene3D Phosphorylase Kinase; domain 1 22 115 - -
Vifa4g03234 329 Gene3D Transferase(Phosphotransferase) domain 1 116 310 - -
Vifa4g03234 329 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 30 290 - -
Vifa4g03234 329 PRINTS Tyrosine kinase catalytic domain signature 111 124 IPR001245 GO:0004672|GO:0006468
Vifa4g03234 329 PRINTS Tyrosine kinase catalytic domain signature 195 205 IPR001245 GO:0004672|GO:0006468
Vifa4g03234 329 PRINTS Tyrosine kinase catalytic domain signature 149 167 IPR001245 GO:0004672|GO:0006468
Vifa4g03234 329 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672|GO:0006468
Vifa4g03234 329 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Vifa4g03234 329 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03234 329 FunFam Serine/threonine-protein kinase isoform 1 23 115 - -
Vifa4g03234 329 Pfam Protein tyrosine and serine/threonine kinase 36 287 IPR001245 GO:0004672|GO:0006468
Vifa4g03234 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Vifa4g03234 329 PIRSF ILK 9 306 - -
Vifa4g03234 329 SUPERFAMILY Protein kinase-like (PK-like) 21 287 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03234 Vifa-Chr4 1016936422 1016937985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03234 11 296 MAP Kinase Kinase Kinase AT1G62400 63.889 1.13e-133 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa4g03234 PK_Tyr_Ser-Thr 3.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03234 - - gmx:100785212 555.444