Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03233 ATGAAGAATTTGCATTGGTTGAAAGAGTTTTCTAACAATGTGAGGACAGGTAGAAGACTTTCACTAGGTGAATACAAAAGAGCTGTGTCTTGGTCTAAGTATTTAGTTTCTTCTGGAGCAGCTATTAAGGGAAATGAAAAAGATGATTGGAATGCTGATTTGTCTCAGTTGTTTATTGGTTCCAAATTTGATTCTGGGAGACATAGCAGGATCTATAGAGGTTTATACAAGAACATTGATGTGGCTATTAAGCTTGTGAGTCAACCTGAGGAGGATGAGGAATTGGCTGCTTTGCTTGAGAGACAATTTACTTCTGAGGTTGCTTTGTTGTTTCGATTGCGCCATCCCAATATTATTACTTTTGTTGGAGCATGCAAGAAACCACCAGTGTTCTGTATAATCACTGAATATATGGCTGGAGGCTCATTGAGAAAGTACCTACAACAACAAGGACCGCATTCAGTTCCTCCGAAAGTGGTTCTTGAGTTAGCCCTTGATATTGCAAGGGGGATGCAATATCTTCATTCTCAAGGAATACTTCATAGGGATCTCAAATCAGAAAATCTGCTGTTGGATGAAGATATGTGTGTAAAAGTAGCCGATTTTGGGATCTCGTGCTTAGAATCTCAAACCGGTAGCACAAAAGGATTCACTGGAACTTACCGTTGGATGGCGCCTGAAATGATCAGAGAAAAGCGTCATACAAAGAAAGTAGATGTCTATAGTTTTGCCATAGTTCTATGGGAGCTAATAACAGGACTCACGCCATTTGATAACATGACACCAGAACAGGCAGCATATGCAGTAACTCACAAGAATGCAAGGCCTCCATTACCATCTGATTGTCCAATGGCATTTAGTCATCTGATAAAGAAGTGTTGGTCAAGCAATCCAAATAAACGGCCACATTTTGTTGAGATAGTCTCAAATTTGGAGAGATATACAGATTCACTCGAGCAGGATCCTGAATTTTTCTCTACCTACAAACCAAGTCCTAGTAATGTACTTGTGAAGTGCTTACCAAATTGTAATGCTGGCTTAGAAGTTAGGACTCTCTTTTAA 1062 0.3964 MKNLHWLKEFSNNVRTGRRLSLGEYKRAVSWSKYLVSSGAAIKGNEKDDWNADLSQLFIGSKFDSGRHSRIYRGLYKNIDVAIKLVSQPEEDEELAALLERQFTSEVALLFRLRHPNIITFVGACKKPPVFCIITEYMAGGSLRKYLQQQGPHSVPPKVVLELALDIARGMQYLHSQGILHRDLKSENLLLDEDMCVKVADFGISCLESQTGSTKGFTGTYRWMAPEMIREKRHTKKVDVYSFAIVLWELITGLTPFDNMTPEQAAYAVTHKNARPPLPSDCPMAFSHLIKKCWSSNPNKRPHFVEIVSNLERYTDSLEQDPEFFSTYKPSPSNVLVKCLPNCNAGLEVRTLF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03233 353 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 52 314 - -
Vifa4g03233 353 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Vifa4g03233 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vifa4g03233 353 Pfam Protein tyrosine and serine/threonine kinase 60 311 IPR001245 GO:0004672|GO:0006468
Vifa4g03233 353 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Vifa4g03233 353 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Vifa4g03233 353 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Vifa4g03233 353 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Vifa4g03233 353 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Vifa4g03233 353 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03233 353 Gene3D Transferase(Phosphotransferase) domain 1 140 334 - -
Vifa4g03233 353 CDD STKc_MAP3K-like 65 311 - -
Vifa4g03233 353 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03233 353 Gene3D Phosphorylase Kinase; domain 1 46 139 - -
Vifa4g03233 353 SUPERFAMILY Protein kinase-like (PK-like) 45 311 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03233 Vifa-Chr4 1016936422 1016937985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03233 30 320 MAP Kinase Kinase Kinase AT1G62400 62.712 1.88e-133 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa4g03233 PK_Tyr_Ser-Thr 4.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03233 - - gmx:100785212 615.15