Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03223 ATGTTTCCTTCACTAGTTTCTGTTACACCTAATAATTCTGTCAATGTTCTTGAGACAAATCTCAGAGAAAACTATGCATCACAACCAATGCACTTGCAAGAAAACTACTTAAAACCAAAGATGAAAGATGAGCTTGTTAATTTTGATGCTCATTCCTCTCAGGGTAATTTCCTGCAAGATTTTCAACATATTGATCAGTTTCACGTGCATGGCTCTTCATCGTGTAATCAAGTTTTTGGGGTCCAGACTCAAAGTTTTGATCCTTTTGGGAATGAACAATGTGCAAATACAGGTTTTGAAGTTTATAGTGACAAGTCTTTTGCGGAGAATAATAATGGTAGTAATCAACATGCTCATTTTAATGATAATCTTCAATATGATGGTTATGGTTTGAATGTTCCTAGAAGGAATCATCTTGATCTTATGGTTGAAAACCAAAGCTATTTTCCATTTAATAATCTTTCCGAAACCAAACCCTTGAACTATGTTGTACCAGATGATGAGGTCTCAAGCATAGCGCCAACAAGTTATTATCAAAGAAGTGATTTGAATAGAAACAACAGGCTACTATCTCCGACCACGAGAAGAGTGTTTAAAGTGAAGAAGAAATCAAACATAGTGAAGGGGCAATGGACCGTCCATGAAGATAGAATGTTGACTCAAATGGTGGAACAATATGGAATGAGGAAGTGGTCTCATATTGCTCAGAGATTGCCTGGAAGAATAGGGAAACAATGCAGAGAAAGATGGCATAACCATTTAAGGCCCGACATTAAGAAAGATATATGGACTGACGAAGAGGACAAGATATTGATTCAAGCTCATACCGAGATAGGAAATAAATGGGCAGAAATTGCAAAAAGATTGGCTGGAAGAACTGAAAACTCAATAAAAAACCATTGGAATGCAACAAAGAGAAGGCAATATTCGAAAAGAAAATGTCGGTCCAAGTATCCTAGAGGCACACTTCTGCAGGAATATATCAAGAGCTTGAACTTAGAGCAAAATCCTCCAAGAGACTTTCGAAAAAAATCGTCTTCTAATGCTAAGAAAACCATTGCTTGTGGCACAAGCAAAGAAGCAATACAACAAATTCCTCAACCACAGATCATGAATCAGTTTTGTCCCAATGACCAATCAGTGCCGAACTACGAGTTTAATGATTTTTGTTTGGATGATAACTTGTTTGAAGAAGGGTGTGGTATTGATTCTCTGCTAGATGATATGGCAAGTGTTCCAAGAATGGTTGAGAAAGAATTTGATCAAAAACTATGTGATAATAAGGGAAGCATGCAAGTTGTTAATCTTGATGAACATCAATTTGAGACTGAGATTGAAGTTAAGAAGGAGTTGGATTTGGTAGAGATGATATCTCAGGTTGATCAAACTATTTGA 1395 0.3656 MFPSLVSVTPNNSVNVLETNLRENYASQPMHLQENYLKPKMKDELVNFDAHSSQGNFLQDFQHIDQFHVHGSSSCNQVFGVQTQSFDPFGNEQCANTGFEVYSDKSFAENNNGSNQHAHFNDNLQYDGYGLNVPRRNHLDLMVENQSYFPFNNLSETKPLNYVVPDDEVSSIAPTSYYQRSDLNRNNRLLSPTTRRVFKVKKKSNIVKGQWTVHEDRMLTQMVEQYGMRKWSHIAQRLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHTEIGNKWAEIAKRLAGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLEQNPPRDFRKKSSSNAKKTIACGTSKEAIQQIPQPQIMNQFCPNDQSVPNYEFNDFCLDDNLFEEGCGIDSLLDDMASVPRMVEKEFDQKLCDNKGSMQVVNLDEHQFETEIEVKKELDLVEMISQVDQTI 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03223 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 258 IPR017930 -
Vifa4g03223 464 FunFam Transcription factor MYB119 261 325 - -
Vifa4g03223 464 Gene3D - 207 260 - -
Vifa4g03223 464 SMART sant 259 307 IPR001005 -
Vifa4g03223 464 SMART sant 207 256 IPR001005 -
Vifa4g03223 464 FunFam Transcriptional activator Myb isoform A 207 260 - -
Vifa4g03223 464 SUPERFAMILY Homeodomain-like 205 301 IPR009057 -
Vifa4g03223 464 CDD SANT 211 254 IPR001005 -
Vifa4g03223 464 Gene3D - 262 321 - -
Vifa4g03223 464 ProSiteProfiles Myb-like domain profile. 203 254 IPR001005 -
Vifa4g03223 464 ProSiteProfiles Myb-like domain profile. 255 305 IPR001005 -
Vifa4g03223 464 Pfam Myb-like DNA-binding domain 263 302 IPR001005 -
Vifa4g03223 464 Pfam Myb-like DNA-binding domain 208 254 IPR001005 -
Vifa4g03223 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 309 IPR017930 -
Vifa4g03223 464 PANTHER MYB PROTEIN-RELATED 179 347 - -
Vifa4g03223 464 CDD SANT 263 305 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03223 Vifa-Chr4 1015656805 1015658667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03223 140 409 MYB Transcription Factor Family AT4G18770 51.943 4.14e-90 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g03223 Myb_DNA-binding 9.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03223 K09422 - gmx:100816653 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03223 4 1015656805 1015658667 Vifa4g03223 4 1015656805 1015658667 ECH