Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03211 ATGCAAAATTTCAATATTTTACGTGGAATCATCATAATATCCTCGTTGTTGTCATGTATAACTTGCTTCAACAATGACGCTGCGGTGCACGAAGCTGGTCTCACGTGTGGTTCTTATCAATACCCTGCTGATGGTGGTGGCAACAAGTTAATGCAAAACTTGATGGTTGCAATGGATGCTTTATCCTATGAGGTGAAACAGCATGGGTGGGGAGCACAAACATTAGTTGGAAATTGGCATCCGATGTACGCGTTAGGCCAATGTCGTCGCGATCTCAATCCAACGCAATGCTACACTTGTTTCACGCAAGCAAGACAGTTATTATCCAGGTGCAACCCGAAGGTTTCGGGTAGAATTTACCTCGACGATTGTTTTCTTCGTTATGATAACTATACTTTCTTTGACGAGGGCGTGGACTTCACGCGTGATACGAGAACGTGTTCGGAGGAAAAGGGGGAGACGGTTAGTGCGGTACATGTAGGGGCGGTGATTATGAATGTGAGTAAAGGTGCCGGGGAACATATGTTCGCGGTGGACGAGGAGGGTGGTGTTTTTGGATTGGCGCAGTGTTGGGAGACAGTGGATAAATGGAGTTGCCAGAGGTGTTTGAGAGAAGCAGAGAAGAGAGTGCTGGAATGTGTTCCTAGTCCTGAGGGTAGAAGCTTGTTTACTGGTTGTTTTATGAGGTATTCGTCGCGTAAATTCTATAACGATGTCTTTGTGAGGAATGATACTTGGACTGGTATTCCTCCCCCTCTTCCTCGTCGAGATCGAAGGCAAATCGGCGTATGGATAATCGCTGCATGTGTAATATCAATGATGGTAGTCATCTTACTTATCATTCCAGTTATATTTATGAGCAAGAAGAGTACAACACCACATGAAAAAAGAAACAACAATTTTGGCGCGTCGCCTAGTTTTGCCAACGTATCTGGTTACCGTTTTAGGTACGCCGTGCTTGAAAGGGCGACAAGTTATTTTGATCCTGCAAACAAATTAGGCCTAAATGGAGGAGATGGTTCCGTGTTCAAAGGAACACTCCCCTCAGGAAGAATCGTTGCTGTCAAACGTTTGTTTTTCGATACAAGACAGTGGACAGACGAGTTGTTCAAGGAGGTCAATTTGATTATCGGAATTAAACATAAGAATGTGGTGAAACTTCTGGGTTGCAGCATTGATGGCCTTGAAAGCCTCTTGGTTTACGAATTTCTTCCCCATAAAAGTCTTGATCAAATCCTTTTAGATAAGACCTCAGAAAATGCTCTACCGTGGGAGAAACGGTTTCAAATCTTATGCGGGATAGCTGAGGGCTTAGCATACCTTCATGAAGGATCTGGAACAAAGATTATTCACAGAGAGATCAAGTCTAGCAACATTCTACTCGACGAGGCTCTAAATCCAAAAATTGTTGATTTTGGTTTTTCTGTTGGCAATGCTGAAAATAGATCTCATCTTAACACTAGAATCTCATATATGGCTCCAGAGTGTCTCAACAAAGGAGAATTAACAGAGAAGGCAGATGTATATGCTTTTGGTGTGATGGTTACTGAAATTGTTTGTGGTAAAAAGAACAGTGTTTTCCCACAAGGCTCAAATTCAGTACTCCACTGTGTGTGGAAGAATTACAAGACAAACAACATTACAACATCAGTTGATCCTGCTCTACTTGGAAAATTTGTGGCAGAAGAGGTATCAAATGCTCTTCAAGTTTCACTTCTTTGTACACAATCTTCTCCTCCTCTTAGACCATCAATGTCAGAAGTAGTTCAAATGCTAACAAAAAGAGACTACAATATTCCCATCCCAATACAACAACCATTCATCAATTATACTAGGCTTACTCTAGATAACCGGACCGCTTCCACCATGAGCATTACGTCAAATGGACGTGCAAGTTCAAGATCATCTTTCCATAGCACCACTAGTTCGTTACACCAAGGTGAAGAAGCAACACTTTTAGAGAATTCATTATCTTCTTCTTCTTCTAAGTTCAACACTTCAAGGAGTCCTGATTCAGATATCCAAGTGAACATTGTGGTGGCTCAACCAAGGTAG 2055 0.4214 MQNFNILRGIIIISSLLSCITCFNNDAAVHEAGLTCGSYQYPADGGGNKLMQNLMVAMDALSYEVKQHGWGAQTLVGNWHPMYALGQCRRDLNPTQCYTCFTQARQLLSRCNPKVSGRIYLDDCFLRYDNYTFFDEGVDFTRDTRTCSEEKGETVSAVHVGAVIMNVSKGAGEHMFAVDEEGGVFGLAQCWETVDKWSCQRCLREAEKRVLECVPSPEGRSLFTGCFMRYSSRKFYNDVFVRNDTWTGIPPPLPRRDRRQIGVWIIAACVISMMVVILLIIPVIFMSKKSTTPHEKRNNNFGASPSFANVSGYRFRYAVLERATSYFDPANKLGLNGGDGSVFKGTLPSGRIVAVKRLFFDTRQWTDELFKEVNLIIGIKHKNVVKLLGCSIDGLESLLVYEFLPHKSLDQILLDKTSENALPWEKRFQILCGIAEGLAYLHEGSGTKIIHREIKSSNILLDEALNPKIVDFGFSVGNAENRSHLNTRISYMAPECLNKGELTEKADVYAFGVMVTEIVCGKKNSVFPQGSNSVLHCVWKNYKTNNITTSVDPALLGKFVAEEVSNALQVSLLCTQSSPPLRPSMSEVVQMLTKRDYNIPIPIQQPFINYTRLTLDNRTASTMSITSNGRASSRSSFHSTTSSLHQGEEATLLENSLSSSSSKFNTSRSPDSDIQVNIVVAQPR 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03211 684 ProSiteProfiles Protein kinase domain profile. 328 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03211 684 Gene3D - 34 133 IPR038408 -
Vifa4g03211 684 Gene3D - 153 235 IPR038408 -
Vifa4g03211 684 ProSiteProfiles Gnk2-homologous domain profile. 134 235 IPR002902 -
Vifa4g03211 684 Gene3D Phosphorylase Kinase; domain 1 287 403 - -
Vifa4g03211 684 FunFam Lectin-domain containing receptor kinase A4.3 404 612 - -
Vifa4g03211 684 SUPERFAMILY Protein kinase-like (PK-like) 312 620 IPR011009 -
Vifa4g03211 684 Gene3D Transferase(Phosphotransferase) domain 1 404 600 - -
Vifa4g03211 684 Pfam Salt stress response/antifungal 176 232 IPR002902 -
Vifa4g03211 684 Pfam Salt stress response/antifungal 51 131 IPR002902 -
Vifa4g03211 684 ProSiteProfiles Gnk2-homologous domain profile. 31 133 IPR002902 -
Vifa4g03211 684 MobiDBLite consensus disorder prediction 624 671 - -
Vifa4g03211 684 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 633 - -
Vifa4g03211 684 Pfam Protein tyrosine and serine/threonine kinase 336 592 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03211 Vifa-Chr4 1013151987 1013154467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03211 16 638 Receptor kinase-like Gene Family AT1G70520 35.814 4.22e-128 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g03211 PK_Tyr_Ser-Thr 5.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03211 - - mtr:25493752 872.078