Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03198 ATGCCTCTAAATCTATGGACCCTTTTTTTCTTATCCATTTTTCTATTACTTCCACACCATTCTTTTCTATCTTTTGCAGTAAACCCACAAGGGGAAGCTCTTCTTTCATGGAAGAGAACATTGAATGGATCCTTGGAAAATTTGAGTAACTGGGACCCAATTGAAGAGACACCATGTAGCTGGTTTGGAGTGAGTTGCAACTTGAAGAACCAAGTAGTAGAATTGGATCTGAGGGATGTGGACTTGCTTGGAAAACTCCCAACAGATTTCATCTCATTGTTTTCCTTGACAAGTCTTATCTTAACTGGAACGAATCTCACCGGTTCAATCCCAAAAGAATTAGGTGCTCTTGTTGAGCTCACCTACTTGGACTTGAGTGACAATGCATTCAGTGGCGAAATCCCGAATGAACTTTGTTATCTGCCTAAACTCGAGGAACTTCATCTGAACTCAAACGAGCTCGTCGGGTCGATACCAATTGCAATCGGAAACCTCACAAAGTTGACAAAGTTGATCTTATACGACAATCAGCTGAGTGGCGAAATTCCCAATACAATTGGTAACATGAAGAGCCTTCAAGTGATAAGAGCTGGAGGAAACAAGAATCTAGAAGGACAATTGCCACTGGAAATCGGGAACTGTTCCAATTTGATTATGTTGGGTTTAGCAGAAACAAGCATCTCAGGTTTCATGCCACCAACTTTAGGACTATTGAAAAAGCTTGAAACATTAGCCATTTACACTTCACTTCTCTCTGGCCAAATTCCCTCTGAAATTGGTGACTGCACACAGCTTCAAAACATTTACCTTTATGAAAACTCACTCACAGGATCCATTCCAACCAAATTGGGAAACCTTAAGAATCTCAGAAACCTATTACTATGGCAGAATAATTTAGTAGGCACCATTCCCCAAGAGATTGGAAACTGTTACCAATTATCAGTAATCGACGCGTCCGTGAATTCATTAACTGGAAGCATTCCTAATAGCTTCGGGAATCTGACTTTGCTTGAAGAACTTCAATTGAGTGCGAATCAAATTTCTGGCGAGATACCAAGAGAATTAGGGAACTGTCAACAACTGACACACCTGGAGCTTGACAACAACCTTATCTCGGGTACCATACCTTCCGAATTAGGAAACCTTGGGAATCTAACGTTGTTGTTTCTGTGGCATAATAAGTTACAAGGTAATATACCTCATTCTCTTTCCAATTGTCAAAACCTTGAAGCTATTGATATGTCACAGAATGTGTTAAGTGGTCCCATACCAGAAGGGATATTCCAGCTTCAGAATCTTAACAAGCTTTTGCTTCTATCCAATAATCTTTCTGGTAAAATTCCCTCTCAGATTGGGAATTGTTCTTCTCTTATTCGCTTTCGAGCCAACGACAACAACATTACTGGTACCATTCCTTCTGAGATTGGTAATCTTAAGAATTTGAACTTCCTTGACTTAGGGAGCAATCGAATTTCTGGTGTTATCCCGGGGGAGATATCTGGCTGCGGGAATCTCACTTTCTTGGACTTGCATTCAAATTTCATTGCTGGAAGTTTGCCGGAAAGTTTGAGCCAGCTTGTTTCACTTCAATTTGTTGATGTCTCCGATAACATGCTTGAAGGCTCCCTCAGTCCATCTCTCGGCTCGCTCGCCGCACTTACTAAACTGGTTCTCCGGAATAATCTAATCACCGGTTCGATTCCAAGCAAACTCGGTTCCTGTGTCAAGTTGCAGTTATTGGACTTAAGCAGCAACAAATTCTCCGGAAAAATCCCTGGTAGCATTGGCAACATTCCGGCTCTGGAAATAGCTCTAAATATGAGCACAAACCAACTCACTGGCAACATTCCTCGTGAGTTTTCAGATTTAACTAAACTCGGAGTTCTTGATCTATCTCACAACATTCTCACCGGAAACCTCGATTATCTCGCCACCTTAGAAAATCTCGTGGTCCTCAATATCTCCTCTAACAAATTCTCAGGCCGCGTTCCGAACACGCCGTTCTTCGAGAAACTTCCTTTAAACGTTCTCTCAGGAAACCCATCTTTATGCTTCGCCGGCAACCGGTGCTACAACCAAGGTGCCGGAAAATCAGGGAAGCCTGCGAGGGAAGCGCGTGTGGTGATGGTTATTCTTCTAAGCGTGGCGTGTGTTTTACTCATGGCGGCGCTGTACGTTGTCGTGGCAGCAAAACGACGTGGAGAGCAAGAAAACGACGTGGAGCTCAATGGAAAAGATAGCGACGCGGAAATGGTCCCACCTTGGGAGGTGACATTGTACCAGAAGTTCGATCTATCAATATCCGACGTGGCAAAAGGTCTCTCTCCCGGCAATATCATCGGGCACGGCCGATCCGGCGTTGTTTACAAGGTTACCATGCCAGCAACTGGATTAACCATCGCCGCTAAAAAGTTCCGGTTATCGGAGAAATTCTCAGCTTCATCCTTTTCATCGGAGATTGCCACATTGGCAAGAATCCGGCACCGTAATATTGTGCGGTTATTAGGTTGGGGTGCTAACCGAAGAACAAAGTTACTGTTTTATGATTATTTACAAAACGGTAATTTGGACGCAATGTTACACGAGGGTTATACAGGATTAGCAGTGGAATGGGAGACAAGGCTCAAGATAGCAATTGGCGTCGCGGAAGGATTGGCTTATTTGCACCATGATTGTGTTCCTGCTATCTTGCACCGGGATGTTAAGTCGCAAAATATTTTGTTAGGAGATAGATATGAAGCTTGTTTGGCTGATTTTGGTTTCGCTCGTTTCGTTGAAGAACATCCCTCTTCATTTTCAGTAAATCCTCAGTTTGCTGGTTCTTACGGCTACATTGCTCCTGAGTATGCTTGTATGATGAAGATAACAGAGAAGAGTGATGTATACAGCTTTGGTGTGGTCCTACTAGAGATAATAACAGGGAAAAGACCGGTTGATCCATCGTTTCCGGATGGAATTCATGTTATTCAGTGGGTGAGGGAGCATTTGAAGAGCAAGAAGGACCCGGTCGAGATTCTTGATTCAAAGTTACAAGGCCATCCAGATACGCAAATACAAGAGATGTTACAAGCACTTGGTATCTCGTTATTGTGTACAAGCAATCGCGCTGATGACCGGCCTACTATGAAAGATGTTGCAGCATTATTGAGAGAAATTCGGCATGACACTACATCAGGTGCTGAGCCTCTCAAGCCTAAAAGATCCGAAACATCATCATATTCTTCGTCTTCGGTGACCCCGGCTCAATTGTTGTTTCTGCAATCAAATTCACATTCACATTCCTCATCAATTGCGTATTCCTCTTCCTCGGCCACAGCAGCCTACCATTCACCAAGGAACCAGTCATGA 3348 0.4331 MPLNLWTLFFLSIFLLLPHHSFLSFAVNPQGEALLSWKRTLNGSLENLSNWDPIEETPCSWFGVSCNLKNQVVELDLRDVDLLGKLPTDFISLFSLTSLILTGTNLTGSIPKELGALVELTYLDLSDNAFSGEIPNELCYLPKLEELHLNSNELVGSIPIAIGNLTKLTKLILYDNQLSGEIPNTIGNMKSLQVIRAGGNKNLEGQLPLEIGNCSNLIMLGLAETSISGFMPPTLGLLKKLETLAIYTSLLSGQIPSEIGDCTQLQNIYLYENSLTGSIPTKLGNLKNLRNLLLWQNNLVGTIPQEIGNCYQLSVIDASVNSLTGSIPNSFGNLTLLEELQLSANQISGEIPRELGNCQQLTHLELDNNLISGTIPSELGNLGNLTLLFLWHNKLQGNIPHSLSNCQNLEAIDMSQNVLSGPIPEGIFQLQNLNKLLLLSNNLSGKIPSQIGNCSSLIRFRANDNNITGTIPSEIGNLKNLNFLDLGSNRISGVIPGEISGCGNLTFLDLHSNFIAGSLPESLSQLVSLQFVDVSDNMLEGSLSPSLGSLAALTKLVLRNNLITGSIPSKLGSCVKLQLLDLSSNKFSGKIPGSIGNIPALEIALNMSTNQLTGNIPREFSDLTKLGVLDLSHNILTGNLDYLATLENLVVLNISSNKFSGRVPNTPFFEKLPLNVLSGNPSLCFAGNRCYNQGAGKSGKPAREARVVMVILLSVACVLLMAALYVVVAAKRRGEQENDVELNGKDSDAEMVPPWEVTLYQKFDLSISDVAKGLSPGNIIGHGRSGVVYKVTMPATGLTIAAKKFRLSEKFSASSFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLQNGNLDAMLHEGYTGLAVEWETRLKIAIGVAEGLAYLHHDCVPAILHRDVKSQNILLGDRYEACLADFGFARFVEEHPSSFSVNPQFAGSYGYIAPEYACMMKITEKSDVYSFGVVLLEIITGKRPVDPSFPDGIHVIQWVREHLKSKKDPVEILDSKLQGHPDTQIQEMLQALGISLLCTSNRADDRPTMKDVAALLREIRHDTTSGAEPLKPKRSETSSYSSSSVTPAQLLFLQSNSHSHSSSIAYSSSSATAAYHSPRNQS 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03198 1115 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Vifa4g03198 1115 SMART LRR_typ_2 286 310 IPR003591 -
Vifa4g03198 1115 SMART LRR_typ_2 550 574 IPR003591 -
Vifa4g03198 1115 SMART LRR_typ_2 117 141 IPR003591 -
Vifa4g03198 1115 SMART LRR_typ_2 478 501 IPR003591 -
Vifa4g03198 1115 SMART LRR_typ_2 502 526 IPR003591 -
Vifa4g03198 1115 SMART LRR_typ_2 334 358 IPR003591 -
Vifa4g03198 1115 SMART LRR_typ_2 646 679 IPR003591 -
Vifa4g03198 1115 SMART LRR_typ_2 382 406 IPR003591 -
Vifa4g03198 1115 SMART LRR_typ_2 165 189 IPR003591 -
Vifa4g03198 1115 MobiDBLite consensus disorder prediction 1093 1115 - -
Vifa4g03198 1115 Gene3D Ribonuclease Inhibitor 429 691 IPR032675 -
Vifa4g03198 1115 SUPERFAMILY L domain-like 43 373 - -
Vifa4g03198 1115 SMART serkin_6 774 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03198 1115 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Vifa4g03198 1115 FunFam Putative LRR receptor-like serine/threonine-protein kinase 604 689 - -
Vifa4g03198 1115 Gene3D Transferase(Phosphotransferase) domain 1 851 1071 - -
Vifa4g03198 1115 Gene3D Ribonuclease Inhibitor 326 426 IPR032675 -
Vifa4g03198 1115 Gene3D Ribonuclease Inhibitor 218 325 IPR032675 -
Vifa4g03198 1115 SUPERFAMILY L domain-like 255 542 - -
Vifa4g03198 1115 Pfam Leucine Rich Repeat 576 597 IPR001611 GO:0005515
Vifa4g03198 1115 SUPERFAMILY L domain-like 471 684 - -
Vifa4g03198 1115 Gene3D Ribonuclease Inhibitor 26 201 IPR032675 -
Vifa4g03198 1115 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 527 599 - -
Vifa4g03198 1115 Pfam Protein kinase domain 778 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03198 1115 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Vifa4g03198 1115 Pfam Leucine rich repeat 463 513 IPR001611 GO:0005515
Vifa4g03198 1115 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1066 - -
Vifa4g03198 1115 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 463 1050 - -
Vifa4g03198 1115 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Vifa4g03198 1115 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 425 519 - -
Vifa4g03198 1115 MobiDBLite consensus disorder prediction 1056 1075 - -
Vifa4g03198 1115 Gene3D Phosphorylase Kinase; domain 1 745 850 - -
Vifa4g03198 1115 SUPERFAMILY Protein kinase-like (PK-like) 758 1049 IPR011009 -
Vifa4g03198 1115 ProSiteProfiles Protein kinase domain profile. 774 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03198 1115 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03198 Vifa-Chr4 1011342367 1011346237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03198 25 1104 Receptor kinase-like Gene Family AT5G56040 54.729 0.0 1118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa4g03198 Pkinase 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03198 - - gmx:100778064 1689.86