Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03192 ATGGCATCATCATCCAGCTCATACAATTCACCTTGCGCGGCCTGCAAATTTTTGAGGAGAAAATGCATGCCAGGGTGCATTTTTGCACCTTACTTTCCACCAGAAGAGCCACAAAAATTTGCAAACGTGCACAAAATATTTGGTGCTAGCAATGTGACAAAGCTTCTCAACGAACTCCTCCCACACCAAAGAGAGGATGCAGTGAACTCACTAGCCTACGAAGCCGAAGCACGAGTGAGGGATCCAGTTTATGGCTGTGTTGGTGCTATCTCTTTTCTTCAAAGACAAGTTCAGAGGCTCCAAAAGGAGCTTGATGCTGCTAACACTGATCTTCTTCGTTATTCTCTCACTGATATCCCTCCACCTCCACCGTCATCTCTTTCTGTGCCACCAGGAATGGTGTCAGTTCAACAAATGCCACAAAGACAGTTTAGTGGAAGTACTTATTCTTCTTTTCCTTATTCTCTTCCTTGGACTGATACTTCATCAGAGGACATGAGTGAGGGTGGTGGAGGAGGAGGGAATCATTTGTGA 534 0.4532 MASSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANTDLLRYSLTDIPPPPPSSLSVPPGMVSVQQMPQRQFSGSTYSSFPYSLPWTDTSSEDMSEGGGGGGNHL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03192 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 135 - -
Vifa4g03192 177 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
Vifa4g03192 177 Coils Coil 90 117 - -
Vifa4g03192 177 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03192 Vifa-Chr4 1009964094 1009964627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03192 1 164 AS2 family AT5G63090 66.667 2.00e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa4g03192 LOB 2.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03192 - - mtr:25493732 307.375