Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03190 ATGGGTCGCCATTCGTGTTGCTTAAAGCAAAAACTACGAAAAGGCTTATGGTCCCCCGAAGAAGATGAGAGGCTTTTCAATCACATAACTAGATTCGGTGTTGGTTGCTGGAGTTCTGTTCCTAAACAAGCCGGGCTTCAAAGATGTGGTAAAAGTTGTAGATTGAGATGGATAAACTATCTCAGGCCGGATTTAAAGCGAGGAATGTTCTCTCAACAAGAAGAGGATCTTATAATTACTCTTCATGAGCTTCTTGGAAATAGGTGGGCTCAAATTGCAGCACAATTACCTGGGAGAACAGATAATGAAATTAAAAATTTCTGGAATTCATGTTTAAAGAAGAAGCTTCTAAAGCAAGGGATTGATCCAACAACACACAAGCCTGTAATAGAACCATATATTAAGGAAGAGAACAAAACAACAGAAACAACAACGACGACGACAACAACAACAACAATGCAAATTCCATCGGTTACATCACAAGGTTCATCATTTCTAATAAGTGATTCCAATTACTATGATAATAATGGCATAACAGAAGCTTCTAGAGATATTTTCAGTAGCAAATCAGCATTGGATCCTTTGTTCTGCTATGATTTCCAATCTAGTTATACCTTACCTTGCCAGAGCCAAAACCAATATGGTATGAATTCAAGCTATGGATTTTCTTCAATGCCGAGTCTAACGAACTCGGATCATGCGATTGTATCGGCAACCGAGTTTTCAGACAACAATTCACCTTCAAAAATGAGTTCATTGTTCATGAATAATCAAGTGAAAGAAATCAATGCTATAAAATCTGAGATTTTGGAACTAGTTTCTTGGGAAGAAGGACAAATCCAAACTCACAATTCAATAGATTTCAATAGCTATCCTTTAACATCACTTTCAGAAGATTTAACAGAAGCAAATTTTGATGTATTCCATCATATATGA 936 0.3654 MGRHSCCLKQKLRKGLWSPEEDERLFNHITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIITLHELLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPVIEPYIKEENKTTETTTTTTTTTTMQIPSVTSQGSSFLISDSNYYDNNGITEASRDIFSSKSALDPLFCYDFQSSYTLPCQSQNQYGMNSSYGFSSMPSLTNSDHAIVSATEFSDNNSPSKMSSLFMNNQVKEINAIKSEILELVSWEEGQIQTHNSIDFNSYPLTSLSEDLTEANFDVFHHI 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03190 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa4g03190 311 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vifa4g03190 311 CDD SANT 70 109 IPR001005 -
Vifa4g03190 311 FunFam Transcription factor MYB86 69 137 - -
Vifa4g03190 311 SMART sant 66 114 IPR001005 -
Vifa4g03190 311 SMART sant 13 63 IPR001005 -
Vifa4g03190 311 Gene3D - 69 150 - -
Vifa4g03190 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa4g03190 311 CDD SANT 17 61 IPR001005 -
Vifa4g03190 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa4g03190 311 PANTHER MYB DOMAIN PROTEIN 55 1 256 - -
Vifa4g03190 311 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa4g03190 311 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vifa4g03190 311 Gene3D - 11 67 - -
Vifa4g03190 311 FunFam MYB transcription factor 11 67 - -
Vifa4g03190 311 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03190 Vifa-Chr4 1007926667 1007927974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03190 1 140 MYB Transcription Factor Family AT4G01680 78.571 1.85e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g03190 Myb_DNA-binding 5.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03190 K09422 - gmx:100811140 449.514