LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g03187	ATGAACCCCTACGACAATCGTTACTCCGATTCCACTTCCTTCCGCGGCCGCCGAAGTGATCTCGTTGGACCTATGCCGCCGCCTAATTTCGGCCGCGGCGGTCCTGCTCCTTACGGTGCTTCTTATGCATCCCATGCTCCCACCGGTTACGGATCCGCACCCGTAACCCCGATTCCTCATTTTGTACCTCCTCCTGGTGGATTTAGTGTCGGTCGGGGCGGTGGTTTTGGTCCTAGGTTGGGCAACGGTCACGCCTCTGATAGAAAATATGACTCTGGTCGTTATGGTAGTAGTGGTGGAGGTGGAAGAGGTCGTGGTGGTTTTGGTGGTGGTGGTAGAGGTGGAAGTCAAGGTTTTAGAGGCTCCGGTAGAGGAGGGAGAGGTGGTGGGTTTGGAGGTAGACATGGATCTTCTAAGGATGACTTGAACAATATTACTCTTCCGAAGCAAGATTTCAGGAATTTGGTTCCTTTTCAGAAGAATTTCTATGTTGAAAGCCCTGTGATAACAGCTATGTCTGATCAGCAAGTTATGCATTATCGTGCGAGTAGGGATATTACTGTTGAAGGGCATGATGTGCCAAAACCAATTCGGTCTTTTCATGAGGCTAATTTTCCTGATCGTTGCCTTGAGGTTATTGCCAAGTTGGGTTTTGTTGAACCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTTACAGTTCATGTCAGTGCACAACCTCGACTAGTACAAGGGGAGGGTCCTGTTGTCCTCGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTATGAAGTTTGGGTCACGGTCAAATCTTAGATGTACATGCATATACGGGGGTGCCCCAAAGGGCCCTCAAATTCGTGATCTTAGAATGGGTGTTGAAATTGTTATTGCTACACCTGGTCGTCTAATAGATATGTTAGAAGCTCGGCACACAAACCTCCAGAGAGTGACATACCTTGTCTTGGATGAAGCTGATAGGATGTTGGATATGGGTTTTGAACCTCAGATTCGGAAGATTGTAAACCAGATTCGACCAGATAGGCAGACATTATACTGGAGTGCAACGTGGCCAAAGGAGGTTGAAGCTCTGGCAAGACAGTTTCTGCACAATCCATATAAGGTAGTTATTGGATCACCCTATCTAAAAGCAAACCAATCTATAAATCAAGTTGTTGAAGTTGTCACTGACATGGAGAAATATAACAGATTGATCAAGCTGCTAAAAGAACTGATGGACGGGAGCCGAATTCTAATATTTACGGAAACAAAAAAGGGATGTGACCAAGTTACAAAGCAGTTGAGAATGGATGGATGGCCAGCATTATCTATCCATGGTGATAAAAACCAGTCTGAAAGGGACTGGGTTTTGTCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATAAAATGCGTGGTCAATTATGACTTTCCATCAAGCCTCGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGAGCTAAAGGAACTGCATACAGTTTTTTTACTCGTGCCAATGCCAAGTATGCCAGGGATTTGATAAAGATCTTACAAGATGCTGGTCAGGTTGTTAGTCCTGCATTGTCTGAATTGACCCGGTCAGCCGGTTTTGGTCAACATGCATCAAGAGGAGGTTTTCGCTCAAGAGGACGAGGAGGAGGCTATGGCAGTCGGGGTTCAACATCAGGATCCAATGCCATTCCTGTAGGCGGGAAGAGGCCATGGCAGTATGTGTAA	1803	0.4648	MNPYDNRYSDSTSFRGRRSDLVGPMPPPNFGRGGPAPYGASYASHAPTGYGSAPVTPIPHFVPPPGGFSVGRGGGFGPRLGNGHASDRKYDSGRYGSSGGGGRGRGGFGGGGRGGSQGFRGSGRGGRGGGFGGRHGSSKDDLNNITLPKQDFRNLVPFQKNFYVESPVITAMSDQQVMHYRASRDITVEGHDVPKPIRSFHEANFPDRCLEVIAKLGFVEPTPIQAQGWPMALTVHVSAQPRLVQGEGPVVLVLAPTRELAVQIQQEAMKFGSRSNLRCTCIYGGAPKGPQIRDLRMGVEIVIATPGRLIDMLEARHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVEALARQFLHNPYKVVIGSPYLKANQSINQVVEVVTDMEKYNRLIKLLKELMDGSRILIFTETKKGCDQVTKQLRMDGWPALSIHGDKNQSERDWVLSEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAYSFFTRANAKYARDLIKILQDAGQVVSPALSELTRSAGFGQHASRGGFRSRGRGGGYGSRGSTSGSNAIPVGGKRPWQYV	600

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g03187	600	SMART	helicmild6	434	515	IPR001650	-
	Vifa4g03187	600	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	198	226	IPR014014	GO:0003724
	Vifa4g03187	600	Pfam	DEAD/DEAH box helicase	245	369	IPR011545	GO:0003676\|GO:0005524
	Vifa4g03187	600	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	327	335	IPR000629	-
	Vifa4g03187	600	FunFam	ATP-dependent RNA helicase RhlB	384	557	-	-
	Vifa4g03187	600	CDD	SF2_C_DEAD	394	524	-	-
	Vifa4g03187	600	Gene3D	-	162	235	IPR027417	-
	Vifa4g03187	600	SMART	ultradead3	217	397	IPR014001	-
	Vifa4g03187	600	MobiDBLite	consensus disorder prediction	1	36	-	-
	Vifa4g03187	600	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	248	535	IPR027417	-
	Vifa4g03187	600	Gene3D	-	236	385	IPR027417	-
	Vifa4g03187	600	Pfam	Helicase conserved C-terminal domain	405	515	IPR001650	-
	Vifa4g03187	600	Gene3D	-	386	557	IPR027417	-
	Vifa4g03187	600	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	175	553	-	-
	Vifa4g03187	600	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	409	554	IPR001650	-
	Vifa4g03187	600	MobiDBLite	consensus disorder prediction	560	600	-	-
	Vifa4g03187	600	MobiDBLite	consensus disorder prediction	69	145	-	-
	Vifa4g03187	600	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	230	381	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g03187	Vifa-Chr4	1007907553	1007911663	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g03187	186	553	Eukaryotic Initiation Factors Gene Family	AT3G19760	33.592	1.22e-61	208

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g03187	K12823		-	gmx:100817092	832.017