Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03186 ATGGAATCAAATCCCAAAAATACAACCAAGTTTCTCTTTAGCTACGGCGGTAAAATCCTTCCCCGCCATACCGACGGCAAGCTCCGCTACACCGGCGGCCACACCAGAGTCCTCGCGCTCCCTCTTCCCATTTCTTTCTCAGAGTTGATGGTGAAGTTTGTGGAATTATGCGGTTCATCTGTTACACTCAAGTGTTGTTTACCAAACGGAGATTTAGAGACATTGATTTCAATCACCAGCCACGAAGATCTGAAAAATATAATCGAAGAATATGATCGAGTTTCTTCGTCGTTACCTCATCCGTTGAAAATCAGAGCTATTCTTTCACCTCCCAAATCCCTCAAGAAAGTATCTCCTCCCCAATCTTCTTCGTCTAGCGTAACATACTCTCCTTCTGGTTCAATTTACGGGTCCTTGGAATCACTGAATCGGCCGAATTGCTCGCCGGTTTCTCTAAGGTTTCCGATTGGTATTCGGAATGGGGCGGTGAAAGGTGGCTGTTACACGGGGCAGTTACATGGAAGCCCTAGATTCGTATATTGGTTCAGTAATAATTATTGTCAATGA 567 0.4497 MESNPKNTTKFLFSYGGKILPRHTDGKLRYTGGHTRVLALPLPISFSELMVKFVELCGSSVTLKCCLPNGDLETLISITSHEDLKNIIEEYDRVSSSLPHPLKIRAILSPPKSLKKVSPPQSSSSSVTYSPSGSIYGSLESLNRPNCSPVSLRFPIGIRNGAVKGGCYTGQLHGSPRFVYWFSNNYCQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03186 188 Gene3D - 27 108 - -
Vifa4g03186 188 Pfam PB1 domain 25 96 IPR000270 GO:0005515
Vifa4g03186 188 PANTHER OS05G0427100 PROTEIN-RELATED 3 125 - -
Vifa4g03186 188 SMART PB1_new 23 109 IPR000270 GO:0005515
Vifa4g03186 188 CDD PB1_UP2 14 108 - -
Vifa4g03186 188 SUPERFAMILY CAD & PB1 domains 25 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03186 Vifa-Chr4 1006778487 1006779145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03186 7 90 MAP Kinase Kinase Kinase AT2G35050 50.000 7.76e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03186 - - mtr:25493721 229.18