Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03162 ATGCTAGCGATAATCTGTTCCAGTTTTGTGTTTCTTTTTCTTGTAATAAAATTGTATTCCTATTCTTCAGAAACCAAAAACTCACCTCCAAGATTACCTTTAATAGGAAATCTTCATCAACTTGGTTCATTCCCCCACCGTTCTTTTTACGCTCTAGCCAAAAAATATGGTCCTTTCATGCAAATGTATTTTGGTAAAGTTCCTATTCTTGTCATCTCATCAGCTGAAGCAGCACGTGAGATAACCAAAACTCATGATCATGTCTTTGCAAACAGACCCCCCAAGATTAATTACGACATTCTTTTGTATAATTTCAGAGATGTTTCATCTGCTCCATATGGAGAGTATTGGAGACAGTTAAGAAGCATTTGTATGTTGCATCTTCTCAGTGCCAAAAGGGTTAAATCTCTTCGCACTGTGAGAGAGGAAGAACTTGTTTTTATGATGGATAAAATAAGAGACTATTCTTCTAAATCACTGCCTGTGAATTTAAGCGAATTGATTGCGTCAAAAACTAATGATGTAGTTTGTAGGGCTACTTTGGGAAATAAGTATAGTGGTGAAAGTGGAACAGGATTTGCTAAGTTGATGTTGGATTTCACCGAGTTGCTTGGTACTTTTATGGTTGGGGATTATGTTCCTAGCCTTGATTGGATGACCCATCTTTCTGGATATTACTCCAGAGCAAAGAAAGTCGCCAAACAATTTGACGATCTTTTGGAGGGTGTAGTCGAGGAACGTTTCAATAATCCGAAAGGTGATGATGAAGAACAGACTGATTTGGTTGATGTTTTGCTTTGGATCCAAAGGACTGAATCCCTCGGCTTTCCTATCGATAGAACAACCATAAAGGCTTTGTTACTGGACATGTTTGTTGCGGGTACAGACACCATATCAACTTTGCTAGAGTGGGAAATGTCAGAACTGTTGAAGAATCCACACATGATGAAGAGATTAAAAGAAGAAGCAAGGACAGTGGCTAACGGAAGAGCATACATAACGGAAGACGATTTGAGTAACATGAAATACTTAAAGGCGCTTGTTAAAGAAGCACTACGGATGTATCCTCCGATCCCACTACTAGTCCCTCGAGAATGCAGACAAGATGTGAAAGTAGACGGTTACAACATTAAAGCCGGGACAAGAGTTTTTATCAACGCTTGGGGAATTGCAAGAGATCCACGATATTGGGATCAACCTGATGAGTTCAGGCCAGAGAGATTCTTGGATACTTCGGTGGATGTTAAAGGAATTGATTACCAGTTGATTCCGTTTGGATCGGGGAGAAGAGGTTGTCCTGGACTAGTGTATGCTATGGCTGCTAATGATCTTGTGTTGGCCAACCTTGTGCATCAGTTTAACTGGGAGTTACCTGGTGGTGCTGGGGCCAAGGTCGATATGTCTGAAGCATTTGGTTTTACTGTCCACAGGAAGTTTCCTCTTATGGCATATGCAGCCAGCACTTCCTAA 1470 0.4061 MLAIICSSFVFLFLVIKLYSYSSETKNSPPRLPLIGNLHQLGSFPHRSFYALAKKYGPFMQMYFGKVPILVISSAEAAREITKTHDHVFANRPPKINYDILLYNFRDVSSAPYGEYWRQLRSICMLHLLSAKRVKSLRTVREEELVFMMDKIRDYSSKSLPVNLSELIASKTNDVVCRATLGNKYSGESGTGFAKLMLDFTELLGTFMVGDYVPSLDWMTHLSGYYSRAKKVAKQFDDLLEGVVEERFNNPKGDDEEQTDLVDVLLWIQRTESLGFPIDRTTIKALLLDMFVAGTDTISTLLEWEMSELLKNPHMMKRLKEEARTVANGRAYITEDDLSNMKYLKALVKEALRMYPPIPLLVPRECRQDVKVDGYNIKAGTRVFINAWGIARDPRYWDQPDEFRPERFLDTSVDVKGIDYQLIPFGSGRRGCPGLVYAMAANDLVLANLVHQFNWELPGGAGAKVDMSEAFGFTVHRKFPLMAYAASTS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03162 489 Pfam Cytochrome P450 28 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03162 489 Gene3D Cytochrome P450 22 485 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03162 489 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 425 434 IPR017972 GO:0005506|GO:0016705
Vifa4g03162 489 CDD CYP71-like 55 481 - -
Vifa4g03162 489 PRINTS P450 superfamily signature 423 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03162 489 PRINTS P450 superfamily signature 346 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03162 489 PRINTS P450 superfamily signature 293 310 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03162 489 PANTHER CYTOCHROME P450 71B11-RELATED 16 485 - -
Vifa4g03162 489 FunFam Cytochrome P450 83B1 14 484 - -
Vifa4g03162 489 SUPERFAMILY Cytochrome P450 29 484 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03162 489 PRINTS E-class P450 group I signature 302 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03162 489 PRINTS E-class P450 group I signature 345 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03162 489 PRINTS E-class P450 group I signature 422 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03162 489 PRINTS E-class P450 group I signature 432 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03162 489 PRINTS E-class P450 group I signature 77 98 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03162 489 PRINTS E-class P450 group I signature 282 299 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03162 489 PRINTS E-class P450 group I signature 386 410 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03162 489 PRINTS E-class P450 group I signature 53 72 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03162 489 PRINTS E-class P450 group I signature 171 189 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03162 Vifa-Chr4 1002301823 1002303401 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03162 1 486 Cytochrome P450 AT3G48280 51.220 5.74e-180 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03162 - - gmx:100819183 565.074