Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03150 ATGAATACACTCTCTTTTTCCATTCTCTTCCTCTTCTCTCTCCTCATACCTTCCCTCATTTCCTCTTCTCCCCTTCAAGACCCTCATTCTGTCACTCAAGAAGTTAACCGGAAAATCAATGGGTCATTAGCTAGGAGGAACTTGGGTTACTTATCATGTGGAAGTGGAAACCCAATTGATGATTGTTGGAGATGTGACCCAAACTGGGAAAACAACAGACAGAGACTAGCAGATTGCGCAATTGGTTTCGGCAAGAACGCTATCGGTGGCAAAAACGGTAAAATCTACGTTGTAACAGACTCGGGCAACGACGATCCAGTGACACCGAAGCCGGGTACACTCCGTTACGCGGTGATTCGAGAAGAACCGTTGTGGATAATTTTTGCAAGAGACATGGTGATTCAGCTAAAAGAAGAACTCATAATGAATTCTTTTAAGACAATTGATGGAAGAGGAGCAAGTGTTCACATTGCTGGTGGTCCTTGTATTACAATTCAGTATGTTACCAATGTTATCATACATGGTATACATATTCATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGGACTCCCCAGGGCATTACGGGTGGAGAACTGTATCGGACGGTGATGGTGTGTCGATTTTTGGTGGGACTCATGTTTGGGTGGATCATTGTTCTTTGTCTAACTGTAATGATGGTTTGATTGATGCTATTCATGGCTCTACTTCTATTACTATTTCTAACAATTACATGACACATCATGATAAAGTTATGCTTTTGGGTCATAGTGATAGTTTTACTCAAGACAAGAACATGCAGGTTACTATTGCTTTTAATCACTTTGGTGAAGGCCTTGTTCAAAGAATGCCTAGATGTAGGCATGGTTATTTCCATGTGGTGAACAATGACTATACTCATTGGGAAATGTATGCTATTGGAGGAAGTGCTAATCCAACAATCAACAGTCAAGGAAACAGATTTGTTGCTCCTGATGACAGATTCAGCAAGGAGGTGACAAAGCATGAGGATGCACCGGACGGAGAATGGAAGGGGTGGAATTGGAGATCGGACGGTGATTTAATGTTGAACGGTGCATATTTTACGGCGTCGGGTGCGGGGAGAGGAGCGTCTTCAAGCTATGCAAGAGCGTCGAGTTTGAGTGCAAGACCATCTTCACTAGTGGGAACAATAACAACGGGTGCAGGCGTACTCAGTTGTAAAAAGGGCTCTCGTTGTTGA 1224 0.4314 MNTLSFSILFLFSLLIPSLISSSPLQDPHSVTQEVNRKINGSLARRNLGYLSCGSGNPIDDCWRCDPNWENNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGNDDPVTPKPGTLRYAVIREEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPGHYGWRTVSDGDGVSIFGGTHVWVDHCSLSNCNDGLIDAIHGSTSITISNNYMTHHDKVMLLGHSDSFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPDGEWKGWNWRSDGDLMLNGAYFTASGAGRGASSSYARASSLSARPSSLVGTITTGAGVLSCKKGSRC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03150 407 FunFam Pectate lyase 56 400 - -
Vifa4g03150 407 Gene3D - 56 400 IPR012334 -
Vifa4g03150 407 PANTHER PECTATE LYASE 18-RELATED 25 405 IPR045032 GO:0030570
Vifa4g03150 407 SMART amb_all 131 328 IPR002022 -
Vifa4g03150 407 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Vifa4g03150 407 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Vifa4g03150 407 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Vifa4g03150 407 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Vifa4g03150 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Vifa4g03150 407 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Vifa4g03150 407 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Vifa4g03150 407 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Vifa4g03150 407 SUPERFAMILY Pectin lyase-like 34 401 IPR011050 -
Vifa4g03150 407 Pfam Pectate lyase 140 322 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03150 Vifa-Chr4 997775136 997776600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03150 4 407 Polysaccharide Lyase AT5G63180 79.950 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03150 K01728 - gmx:100101868 730.709