Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03149 ATGGATGGCAGGAGGCATTCTGTTGATGTTCCTATTTCTAAAACTCTTGTTGCATTGAGGAGAGTGAGGTCATTGAGGGATCCTTCAACAAATGGTATAAGCAAGCTCTCTCCTTTGATTGATAATGAGCATTGGGAAAATGGGGTTTCTCTGAGGTTTCTTGATGCTCCTTATGCATGTGAGTTTGATGATAATGGTTGTTTAAGGTCTAAGGGGTTAGATGAGGAGTTAGTTTACTCTAATCCTAAGCAGCAAGGAGTTTTGGGGAATAAATCGCCGAAAGAAAGCTGTTGTAGTAACCATGAAGTTAAAGGATTGGATTTGGCTTCTGTTATTCCTTCTAGTAATCATTTGAAGGATGATGAATCTTACTATTTATCGACTGCGTTATCGTCGCAATTAGGGAGAATAGATTATGCAAAATCGACCAGGAAGTTTATGCGTAAGAATCAAGTGAAGCCGTTTGAGTTGATGGGTGATAATGCAAAGAGTGTTGAGAGTCCATGCCTTTCGATTCGCGATGCTATGTCAGCTTATAGTGCCTCCACACAAACGCCTCGAGATGTTGATGATGTTTTGGTTGATTACAATGGATGTGGAATAAGCTGTTGTTGGTCGAAGTCACCGAGGTTTAGAGACTCGAATCTTTATTCTGAAATGGAAGAACTTCCCTTGATGTTGCAGCGTGGTAATGAAACAGATCTTTATGGACATAAAAGCATGAGACACATTGGTGGTGAGATTAGTCCAATGTTTGAAACTCCAAGGAGTTTATCTATGAAATTTAGGCCGAAATCTTTCAATGATTTGGTCGGGCAAAATGTGGTTGGGAAGTCACTTTTGGGTGCCATCTCTACAGGAAGGATAGCTTCATTTTATCTCTTTCATGGTCCTCGTGGCACGGGGAAAACCTCTGCATCGAGGATATTCGCTGCTGCATTGAATTGCCTCTCGCCCGATGAGCAAAGGCCGTGTGGTTTGTGTAGAGAATGTGTTATGTTTTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTTGACTCTCTAAGAGTTAACCGATCGGAGAAGATTAAATCCCTCGTTAAGAATGCATGCACAGCAGCTCCAGATTTATCGCGTTTTAAGGTGTTCATTATCGATGAGTGTCAGTTATTGAACAAGGAAACATGGGCAACTCTCTTGAATAGCTTAGGGAGTGTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTACCACGAAGTGCGGTTTCTCGGGCTCAGAGGTATCACTTTACAAAGATTAATGATGCCGACATTGCGAGTAGATTGAAAAGAATTTGTGCTGAAGAGGGCCTTGAATCTGAGCAAAATGCTTTGAATTTCATTGCTGCTAAATCCTGTGGCTCTCTTAGGGATGCAGAAATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAAGTCACAATTTCCTTAGTCTATGAACTTACTGGTGTCATTTCTGATGATGAACTTCTTGATTTGCTGGACCTGTCATTGTCATCCGACACTACAAATACGGTTATAAGAGCTCGGGAGTTGTTGAGATCAAGAATAGATCCTTTACAGCTTACATCTCAGCTGGCGAATCTAATTATGGACATTCTTGCAGGGAAATGTGAACTTGGTGGTTCTGAGATCAGAAGAAGATTTTCTGATCGACATATTTCGGAAGCAAACATGCATAAACTTAGTCATGCATTAAGAATACTTTCCGAAACTGAGAAGCAGTTGAGAATTTCTAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGTTAAGCTCTATAGAATATTCATCTGTAGATGCAAATGATACCAAGTTGTGTGTGACAGCTGCATCCAATAGAGATGGTGATTTATGCAGTACATCATCTACAGGTGAAAGTTTGAAGCAACTTGTGATTGCGACAGGTAAGTGTGATGAGAAGTCATATAAAATAGAAGCTCAAGAGGATGACAAGGTGATGTTAGATTCGATATGGTATAAAGCCACGGACACATGTCAATCTAGAAGGCTCAAAGCTTTTCTCAGGAAGCAAGGGAAGTTGTCTTCAGTTTGTATTAATCAAGGTCTTGCAGTTGTGGAGCTGGAATTCCACCACCGTGTCGATGTAGCTAAAGCTGAAAAGTCATGGAAACAAATTGCGAGTTTCCTACAGTTCATATTGGGATGTAACATTGAGCTCAGAATCAATCATGTACCTTGTACTTCAGATTCTAAGTATGCAAAGTTGAAGAGGTCTTCTTTCAATTTCTTTAACTGTTCGCGCAGAATCCTTCGAAAATCACTATCATCCGATGAACAAGGATGTGAATCAGACTATGCGGATTGCACCTCTCAAAAGCCTATGATGATGGACCAAACTCTATCTCGCTCCTCTGATCGCGGATCTCGTGTAACAACTCTAAGAAGCTGTGAAGGGAATTTACTAAGCTCGGGGAAAGTATTTTTGAATAAGATAATAGATCAAGAGACTCCAAAGATTTCTTTTTCTAGAGATGATAATTCTGTCAAGGAAGAAGAGTGCAATTATGAACATCTTGCTTCATCAACCGTTGATTTTGATAATAATAATCGGACTAACTGTTTTCCTCGAACGCTCTGGCTTCATAGAAAATTCTCTAGTTCATATGCTTCAAAACAGAAGGGTTTTTGTTTTATCAATCCCCAAGTACAAATGTACTGA 2721 0.3991 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISKLSPLIDNEHWENGVSLRFLDAPYACEFDDNGCLRSKGLDEELVYSNPKQQGVLGNKSPKESCCSNHEVKGLDLASVIPSSNHLKDDESYYLSTALSSQLGRIDYAKSTRKFMRKNQVKPFELMGDNAKSVESPCLSIRDAMSAYSASTQTPRDVDDVLVDYNGCGISCCWSKSPRFRDSNLYSEMEELPLMLQRGNETDLYGHKSMRHIGGEISPMFETPRSLSMKFRPKSFNDLVGQNVVGKSLLGAISTGRIASFYLFHGPRGTGKTSASRIFAAALNCLSPDEQRPCGLCRECVMFFSGRSKDVKEVDSLRVNRSEKIKSLVKNACTAAPDLSRFKVFIIDECQLLNKETWATLLNSLGSVSQHVVFVMITPDLDKLPRSAVSRAQRYHFTKINDADIASRLKRICAEEGLESEQNALNFIAAKSCGSLRDAEMMLDQLSLLGKKVTISLVYELTGVISDDELLDLLDLSLSSDTTNTVIRARELLRSRIDPLQLTSQLANLIMDILAGKCELGGSEIRRRFSDRHISEANMHKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSIEYSSVDANDTKLCVTAASNRDGDLCSTSSTGESLKQLVIATGKCDEKSYKIEAQEDDKVMLDSIWYKATDTCQSRRLKAFLRKQGKLSSVCINQGLAVVELEFHHRVDVAKAEKSWKQIASFLQFILGCNIELRINHVPCTSDSKYAKLKRSSFNFFNCSRRILRKSLSSDEQGCESDYADCTSQKPMMMDQTLSRSSDRGSRVTTLRSCEGNLLSSGKVFLNKIIDQETPKISFSRDDNSVKEEECNYEHLASSTVDFDNNNRTNCFPRTLWLHRKFSSSYASKQKGFCFINPQVQMY 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03149 906 Gene3D - 252 429 IPR027417 -
Vifa4g03149 906 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 258 671 - -
Vifa4g03149 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 481 IPR027417 -
Vifa4g03149 906 SUPERFAMILY post-AAA+ oligomerization domain-like 501 602 IPR008921 GO:0003677|GO:0006260
Vifa4g03149 906 FunFam DNA polymerase III subunit gamma/tau 432 494 - -
Vifa4g03149 906 NCBIfam DNA polymerase III subunit gamma/tau 257 604 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vifa4g03149 906 Pfam DNA polymerase III, delta subunit 273 431 - -
Vifa4g03149 906 CDD HLD_clamp_pol_III_gamma_tau 431 494 IPR045085 -
Vifa4g03149 906 Gene3D - 432 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03149 Vifa-Chr4 996734939 996738154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03149 248 496 Core DNA Replication Machinery Family AT1G21690 23.320 2.76e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03149 - - gmx:100819111 1092.41