Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03147 ATGGCTAATTCTGAAGAGGTTTTCCCATGGCTAAAATCGCTTCCAGTAGCACCAGAGTATCGACCAACTCTAGCAGAGTTTCAAGATCCAATAGCTTACATTTTCAAGATCGAAAAAGAAGCATCCAAATATGGAATCTGCAAGATCATTCCACCGGTTTCACCTTCTCCTAAGAAAACCGCTGTTTCTAACTTCAACCGGTCTCAACCCCGGTTCACAACCCGTCAACAGCAGATCGGATTCTGTCCACGGCGACCTCAGCCGGTTCGACGGCCGGTCTGGCATAGTGGTAACCACTACTCATTCCGTGGATTCGAAGCTAAGGCTAAGTCTTTTGAGAAAAGTTACTTCAGAAAAGGGAAGAAGCTTGGTCAGTTTTCGCCTCTCGAAGTTGAAGCTATGTACTGGAAAGCTACTGCTGATAAGCCTTTTTGTGTTGAGTATGCGAACGACATGCCTGGTTCTGCGTTTGGGGAAGTAAACGACGGTGGTTGTGGTTTTGGGGGAGATGGTTTTTTGACAGTGGGTGAAACGGGTTGGAATATGAGAGGGGTTTCGAGGGCGAATGGGTCTTTGTTGAAGTTTATGAAAGAAGAGATTCCGGGTGTTACTTCTCCTATGGTTTATGTTGCTATGTTGTTTAGTTGGTTTGCTTGGCATGTGGAGGATCATGATTTGCATAGCTTGAATTATCTTCATTTGGGGGCTTCTAAGACTTGGTATGGTGTTCCTAGAGAGGCTGCTGTTGCTTTTGAGGATGTTGTTAGAGTTCATGGATATGGAGGAGAGATTAACCCTCTTGTTACTTTTGCTATTCTTGGGGAGAAAACTACAGTGATGTCCCCTGAAGTATTCGTTCGCGCAGGTGTTCCATGTTGCAGGTTAGTGCAAAATGCTGGGGAGTTTGTTGTGACATTTCCAAGAGCCTATCACACAGGATTCAATCATGGTTTTAATTGCGGAGAGGCAGCTAACATTGCAACACCTGAATGGCTGACAGTTGCTAAAGATGCTGCTATTAGGAGGGCTTCAATTAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGGCCTTGCTATGTGTTCTAGAATCCCTGAAGACATCAGCGTCGGACCAAGGAGTTCTCGACTTAAAGATAAGAAGAAGGGTGTAGGACAAACCGTAATTAAAGAACTATTTGCACAGGACGTGTTAAAGAATAATGATCTGCTGCATGCACTCGGCAAAGGATCTTCTGTAGTACTCCTTCCTCGTAGCTCTTCTGACTTTTCTGTTTACTCAAAATTACGTGTTGGATCTCAACAACTAAAGGTTAACACCGAGTTTTCATTCAATGCGTGCAATTCTGAGGGAACGAATTACTCAAAAAAGTTCGTTTCAGACGATCTAGTATTCAACAGGAATCATGGAATCAAAAAAGTAAAAGGTTTTTCTTCTGTAAAAGAAAAATCTGCTACCTTATGTGAAAGGAACAGAGTTTGCTCATTCAGTGCAAATGGTGACACATGCACTTCAAATTCAAAAACATTGCAAAGAGACACTGAAAAAGATACTAGTCAAGGAGATGGGTTATCAGACCAGAGACTATTCTCATGTCTCACATGTGGAATATTAAGTTTTTCCTGTGTTGCAATTGTACAGCCTAACGAACCAGCAGCTAGATACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATCGGATAGTTGGGTCTGGAGTAAATAGAAATAAGTTTACTGCTGCCCATGAAGATGCAAACGTTCCCAAGCAGAGCACATATACAGGATGGACAAAACAGAATGCTGGAAATGATTTATACGATGTTCCTGTTGAATCTGTGGAACAACAAACACAAATTGCTGATCAAAGTTATATGGAAGCTTCAGATACTGAAAAAGAAAACACGGCTCTTGCATTGTTGGCTATAGCATATGGAAATTCATCCGATTCCGACGAAGAGGATCAAAGTGACTCAGATATTGCAGTTGATGGTGATGATTTAAACACGACGAACCCTCCATTAGAAAGTAAATCCCAGGAGAGGCCTTGTTTGCCTTCTCAATTTCAAGATTGCCATGCTAGCCCTGTAAATATTAATAATTATGAGAGTTATATGCATAAGAAAGTTGAGCGCATTATGAGTCCTTTTGATCATTCTACCTTGAATTGTTCCGAAGATACTCTTACTGAAATGCCTTTGTTGGGCAAGACTGTGAATCCCGTTGACAATAAAAATCTATCATTGGTGCCACCAACTAATGAAGATGCGTCTAGGATGCATGTCTTCTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATTGGAGGAGCGCATATATTGCTCCTATGTCATCCAGATTATCCGAAGATAGAGGCTGAAGCGAAGTTTATGGCAGAAGAAACTGGGATTGGTTATAAGTGGAAGAATACCATATACAGGCATGCCAGCGGGGAAGACGAGGAAAGAATTCAATCAGCTCTGGATAGTGAGGAGACTGTTTCTGGCAATAGTGATTGGGCTGTAAAGTTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGGTCTCCACTTTACAGTAAGCAGATGCCTTACAATTCTGTTCTGTATTATGCATTTGGTTGTAGCTCTCCAGTAAGCTCGCCCGTTGAGCCCAGTGTCTGTCAGAGAAGGACAAATAGGCAGAAAAAGGTAGTTGCTGGAAAGTGGTGCGGAAAAGTTTGGATGTCTAATCAGGTCCATCCCCTTTTAGCAAAAAGAGAGCTTGGAGATGTTGAGAATGAGAAAAGCGTGCAAATGTTGCCATTACTCGACGAGAAAAGTGAGAGATCAGAACATACACAGAAAAGTAATACTACAAATAGGAAATCTGGTAGGAAAAGGAAAGTGGCCGTAGAGAGTGAAGGAGAGTGGGAAGGAAGTTTTTCTGAGGAGGATTGGCTTTCTGATCATTCAATTGAAGATAAATGCAATCAATCTCAAAGGAGGATTTGTGCAAGTAAGCGAACCAGGCAAATTGAGGGACATGACACTGCTTCAGAAGGGGATTATTCTCCTTTGCAGCACCATAACATGCTTAAAAGCAAGCATACAAAATGCATGGAAAGTGATGCAGTTTCAGATGATTCGCTAGATGATGATACAATGGACTATGATTCTGATTTGCCACTGAAGGAAGAGCATAGTGACACGCAATATGCTAAATCAGAGGATTCATTGGGCGTTGGTTCTCGTCAGCGGCATAGGAAGACTCCTAAAAGCAAGTATGACCAATACACTGCTGAAGATGTGATTTCTGATGACCAAACAGAGGTTTATATTCAGAAGCAAAAACGCAGGATATCTAAAAGCAGGCAAAACAATTATCTTTCTGAAGAAGAAGCAGTGATATCTGACGATCAACTGGAGCACTGCATGCTCAAGCAACAGAAGAGGAGTCCTAAAAGCTGGCAGGCCAATTACCCTGTTGAAGAGGATATTATATCTGATGACGAACCTGAATGCCATTCTCGCAAGTATCAAAGAAGGATTCCAAAAGACAAACAAGCCAAACCCATCGTCGGGGAAGATGTAACATGTGATGACCAGTTGGAGTGTCACTTTCAGAAGCCCCGGAGAAGTAAGCGAATGAGCAAGAAAAATAAATATAATGATGAAAAATATATGGATGACTCGGCTGAAAGTGATTCTCATGTGCTGCATAAAACTCCTAAAAGGAAGCAAGCTAAATTCACAGATGAAAACGATATAAACTCAGATGGTCAGATGGAGGATGATTGTCATCAGCAACACAAGAGACCTCTTCGACGTAAGCAAACTAAATCACAAACTCTTCATCAAATGAAACAAGCTAATTCGCCCTGTGTGAGAAGCAAGCCATCTCGGCCTGTGAAACGTGGTGCTCATTTGCTAACAAAATCAAAGGCTCCCCGGAAAATGAAGCAACAGCCTCTTGTGTGGAACGATCAATCAGTTAACTCCAAAGATGAAACTTCACAAATTGAAGACAATGAAGCTAGAAGACCTCCCAGCATGCGCATTAGGAAAAGAGTCCAAAAAATTCAGAATGAATACGAGGGGAAAACAAAAGAAAAAGAAACCAAAAAGAAAAAAGTGAAGAATGCAATAACTGCAAAGGTTTCAGCTGGCCGTGTCATAGAGAAGGATGAGGAAGGAGAATACCAGTGTGACATTGAAGCGTGCACCATGAGTTTTTGTTCTAAACAGGAGCTGATGCATCATAAGAAAAATATATGTCCCGTGAAAGGGTGTGGAAAGAAGTTTTTCTCACACAAATATCTGGTGCATCACCGTCGAGTTCATGAGGATGATCGCCCACTAAAGTGTCCTTGGAAGGGATGCAAGATGGCTTTCAAGTGGTCATGGGCTCGTACTGAACATATTCGAGTCCACACCGGTGCTCGTCCATATGTGTGTGCTGAGCCGGGGTGTGAACAAACGTTCAGGTTTGTTTCTGATTTCAGCCGCCATAAGCGAAAAACTGGTCATTCAGTAAAGAAAACTCGTAAATAG 4554 0.4205 MANSEEVFPWLKSLPVAPEYRPTLAEFQDPIAYIFKIEKEASKYGICKIIPPVSPSPKKTAVSNFNRSQPRFTTRQQQIGFCPRRPQPVRRPVWHSGNHYSFRGFEAKAKSFEKSYFRKGKKLGQFSPLEVEAMYWKATADKPFCVEYANDMPGSAFGEVNDGGCGFGGDGFLTVGETGWNMRGVSRANGSLLKFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHLGASKTWYGVPREAAVAFEDVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVRAGVPCCRLVQNAGEFVVTFPRAYHTGFNHGFNCGEAANIATPEWLTVAKDAAIRRASINYPPMVSHFQLLYDLGLAMCSRIPEDISVGPRSSRLKDKKKGVGQTVIKELFAQDVLKNNDLLHALGKGSSVVLLPRSSSDFSVYSKLRVGSQQLKVNTEFSFNACNSEGTNYSKKFVSDDLVFNRNHGIKKVKGFSSVKEKSATLCERNRVCSFSANGDTCTSNSKTLQRDTEKDTSQGDGLSDQRLFSCLTCGILSFSCVAIVQPNEPAARYLMSADCSFFNDRIVGSGVNRNKFTAAHEDANVPKQSTYTGWTKQNAGNDLYDVPVESVEQQTQIADQSYMEASDTEKENTALALLAIAYGNSSDSDEEDQSDSDIAVDGDDLNTTNPPLESKSQERPCLPSQFQDCHASPVNINNYESYMHKKVERIMSPFDHSTLNCSEDTLTEMPLLGKTVNPVDNKNLSLVPPTNEDASRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFMAEETGIGYKWKNTIYRHASGEDEERIQSALDSEETVSGNSDWAVKLGINLFYSANLSRSPLYSKQMPYNSVLYYAFGCSSPVSSPVEPSVCQRRTNRQKKVVAGKWCGKVWMSNQVHPLLAKRELGDVENEKSVQMLPLLDEKSERSEHTQKSNTTNRKSGRKRKVAVESEGEWEGSFSEEDWLSDHSIEDKCNQSQRRICASKRTRQIEGHDTASEGDYSPLQHHNMLKSKHTKCMESDAVSDDSLDDDTMDYDSDLPLKEEHSDTQYAKSEDSLGVGSRQRHRKTPKSKYDQYTAEDVISDDQTEVYIQKQKRRISKSRQNNYLSEEEAVISDDQLEHCMLKQQKRSPKSWQANYPVEEDIISDDEPECHSRKYQRRIPKDKQAKPIVGEDVTCDDQLECHFQKPRRSKRMSKKNKYNDEKYMDDSAESDSHVLHKTPKRKQAKFTDENDINSDGQMEDDCHQQHKRPLRRKQTKSQTLHQMKQANSPCVRSKPSRPVKRGAHLLTKSKAPRKMKQQPLVWNDQSVNSKDETSQIEDNEARRPPSMRIRKRVQKIQNEYEGKTKEKETKKKKVKNAITAKVSAGRVIEKDEEGEYQCDIEACTMSFCSKQELMHHKKNICPVKGCGKKFFSHKYLVHHRRVHEDDRPLKCPWKGCKMAFKWSWARTEHIRVHTGARPYVCAEPGCEQTFRFVSDFSRHKRKTGHSVKKTRK 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03147 1517 ProSiteProfiles JmjC domain profile. 174 343 IPR003347 -
Vifa4g03147 1517 MobiDBLite consensus disorder prediction 941 959 - -
Vifa4g03147 1517 MobiDBLite consensus disorder prediction 506 526 - -
Vifa4g03147 1517 SMART JmjN_1 16 57 IPR003349 -
Vifa4g03147 1517 SUPERFAMILY beta-beta-alpha zinc fingers 1464 1508 IPR036236 -
Vifa4g03147 1517 SMART cupin_9 174 343 IPR003347 -
Vifa4g03147 1517 Pfam JmjC domain, hydroxylase 207 325 IPR003347 -
Vifa4g03147 1517 SUPERFAMILY beta-beta-alpha zinc fingers 1425 1457 IPR036236 -
Vifa4g03147 1517 Gene3D Classic Zinc Finger 1422 1508 - -
Vifa4g03147 1517 ProSitePatterns Zinc finger C2H2 type domain signature. 1426 1448 IPR013087 -
Vifa4g03147 1517 MobiDBLite consensus disorder prediction 1336 1354 - -
Vifa4g03147 1517 Pfam jmjN domain 18 51 IPR003349 -
Vifa4g03147 1517 ProSitePatterns Zinc finger C2H2 type domain signature. 1486 1510 IPR013087 -
Vifa4g03147 1517 MobiDBLite consensus disorder prediction 650 687 - -
Vifa4g03147 1517 MobiDBLite consensus disorder prediction 1008 1097 - -
Vifa4g03147 1517 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1119 - -
Vifa4g03147 1517 ProSiteProfiles Zinc finger C2H2 type domain profile. 1424 1453 IPR013087 -
Vifa4g03147 1517 ProSiteProfiles Zinc finger C2H2 type domain profile. 1484 1515 IPR013087 -
Vifa4g03147 1517 MobiDBLite consensus disorder prediction 666 687 - -
Vifa4g03147 1517 Coils Coil 1358 1378 - -
Vifa4g03147 1517 MobiDBLite consensus disorder prediction 1302 1316 - -
Vifa4g03147 1517 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Vifa4g03147 1517 MobiDBLite consensus disorder prediction 1211 1354 - -
Vifa4g03147 1517 FunFam Probable lysine-specific demethylase ELF6 1451 1480 - -
Vifa4g03147 1517 MobiDBLite consensus disorder prediction 1219 1254 - -
Vifa4g03147 1517 Gene3D Cupin 10 347 - -
Vifa4g03147 1517 SMART c2h2final6 1454 1478 IPR013087 -
Vifa4g03147 1517 SMART c2h2final6 1484 1510 IPR013087 -
Vifa4g03147 1517 SMART c2h2final6 1401 1423 IPR013087 -
Vifa4g03147 1517 SMART c2h2final6 1424 1448 IPR013087 -
Vifa4g03147 1517 MobiDBLite consensus disorder prediction 941 976 - -
Vifa4g03147 1517 ProSitePatterns Zinc finger C2H2 type domain signature. 1456 1478 IPR013087 -
Vifa4g03147 1517 ProSiteProfiles Zinc finger C2H2 type domain profile. 1454 1483 IPR013087 -
Vifa4g03147 1517 SUPERFAMILY Clavaminate synthase-like 190 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03147 Vifa-Chr4 995652485 995660669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03147 1350 1517 C2H2 Transcription Factor Family AT3G48430 63.889 6.82e-65 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa4g03147 JmjC 6.5e-37 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03147 - - gmx:100775813 1815.05