Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03145 ATGGTGGGTGGTTATGGTGATGATGGTTATGGTGGTGGATATGATGCTGTCTATGGTTATGGTGATGGAGTTGAAAAGAAGGAAGGTAACATCAGTGATGGAAATCACCAGTTTCCTTTGAGGCCTGAAGCTGAAGATTGTTCCTTTTATATGAAGACGGGGAGTTGCAAGTTTGGAATAAACTGCAAGTTTAATCACCCCATTAGGAGGAAAAACCAGGCTGTAAGGGAGAAGGTGCGAGATAGAGAAGAACCTGCTGAGAACTTGGGCCAGACAGAATGCAAGTATTATCAAAGATCTGGGGGTTGTAAGTTTGGAAAAGCCTGTAAGTTCAACCACATAAGAGGTTATGCAGCACCAATTTCAGAACTAAACTTTCTCGGCTTACCTATTCGTTTGGGAGAGAAAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGATCAAACTGTAGGTTTAATCATCCTGATCCTACAACTGTGGGAGGAAGTGATCCTCAATCAGGGTATGGTAATGGAGGGTCTGTTCCATTACGAGGTGTATCCCAACAATCTGCCTCTTCATGGTCTTCTTCATCAAGAAAGTTAAATGAAGCACCTTATGTACCAATGATGATTACACCTACTCAAGGACTTGCTCCTCAAAGTCCTGATTGGAATGGATATCAGGCGCCTGTCTACTTATCTGAGAGGATCATGCACCCATCTTCTACATATGTTATGAATAACCCATCAGTTGAAACAAATGTGTATGTGCCTCCTCAAAAGCAGATGCCATTTGAAGTGTATCCAGAAAGGCCTGGTGAACCTGAGTGCAGCTTCTTCTTAAAAACTGGGGATTGCAAGTTCAAGTCTAATTGTAAATTTCACCACCCAAAGAATAGGATGGCACGATTACCTCCTTGCAACCTCAGTGACAAGGGTTTGCCTTTGAGACCTGACCAGAGTGTCTGCTCGCACTATTGTCGTTATGGAATTTGCAAATTCGGACCAGCTTGTAGATTTGATCACCCAGAAAGCGCACTTCCCTTGATGATGCCTGGACTCGGCCAGCAATCCTACTCAAACCCGGGTAATGCTCAGATGTCTGGAATGGGTGGAAGTGCAGGTGACGTGACAATTCAGCAATCTGTGTAA 1143 0.4409 MVGGYGDDGYGGGYDAVYGYGDGVEKKEGNISDGNHQFPLRPEAEDCSFYMKTGSCKFGINCKFNHPIRRKNQAVREKVRDREEPAENLGQTECKYYQRSGGCKFGKACKFNHIRGYAAPISELNFLGLPIRLGEKECPYYMRTGSCKFGSNCRFNHPDPTTVGGSDPQSGYGNGGSVPLRGVSQQSASSWSSSSRKLNEAPYVPMMITPTQGLAPQSPDWNGYQAPVYLSERIMHPSSTYVMNNPSVETNVYVPPQKQMPFEVYPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRMARLPPCNLSDKGLPLRPDQSVCSHYCRYGICKFGPACRFDHPESALPLMMPGLGQQSYSNPGNAQMSGMGGSAGDVTIQQSV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03145 380 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 67 IPR000571 GO:0046872
Vifa4g03145 380 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 113 IPR000571 GO:0046872
Vifa4g03145 380 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 158 IPR000571 GO:0046872
Vifa4g03145 380 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 295 IPR000571 GO:0046872
Vifa4g03145 380 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 316 341 IPR000571 GO:0046872
Vifa4g03145 380 ProSiteProfiles Zinc finger C3H1-type profile. 268 296 IPR000571 GO:0046872
Vifa4g03145 380 SUPERFAMILY CCCH zinc finger 42 69 IPR036855 GO:0046872
Vifa4g03145 380 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
Vifa4g03145 380 ProSiteProfiles Zinc finger C3H1-type profile. 41 69 IPR000571 GO:0046872
Vifa4g03145 380 SUPERFAMILY CCCH zinc finger 133 159 IPR036855 GO:0046872
Vifa4g03145 380 SUPERFAMILY CCCH zinc finger 315 344 IPR036855 GO:0046872
Vifa4g03145 380 SUPERFAMILY CCCH zinc finger 272 298 IPR036855 GO:0046872
Vifa4g03145 380 Gene3D - 87 167 - -
Vifa4g03145 380 Gene3D - 267 351 - -
Vifa4g03145 380 MobiDBLite consensus disorder prediction 358 380 - -
Vifa4g03145 380 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Vifa4g03145 380 PANTHER PROTEIN PHOSPHATASE RELATED 24 359 - -
Vifa4g03145 380 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Vifa4g03145 380 SMART c3hfinal6 41 68 IPR000571 GO:0046872
Vifa4g03145 380 SMART c3hfinal6 88 115 IPR000571 GO:0046872
Vifa4g03145 380 SMART c3hfinal6 132 159 IPR000571 GO:0046872
Vifa4g03145 380 SMART c3hfinal6 268 295 IPR000571 GO:0046872
Vifa4g03145 380 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Vifa4g03145 380 SUPERFAMILY CCCH zinc finger 91 114 IPR036855 GO:0046872
Vifa4g03145 380 Gene3D - 23 80 - -
Vifa4g03145 380 MobiDBLite consensus disorder prediction 160 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03145 Vifa-Chr4 995255898 995258595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03145 29 67 C2H2 Transcription Factor Family AT3G02830 48.718 2.08e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g03145 zf-CCCH 4.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03145 - - psat:127074023 737.258