Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03135 ATGTCACCTTCACTTTATTATCCCGTTACTACTACCTTCAAAAACGAGGTAGAGTATCTTGAGAATGATGAAAATCCATTAATGGGTTGTTATGCTTCTTTATGTCCAAATTTACCTATTTTGGAAAACAGTGCTAGTTCATCATGGATTCTTCCTTTTCCTGATCATGAAACTGAAACCATTAGGGATCACAAGAAGGTGAAAAGATCAACGGTTACTATCCCTATTTGGTTTGCGAATTTCAGCAGCCATAGTAATAGTTTCTTCAACAGTATAAACAGTAGCAACAGTGTGAGTAGCATTCCAAGGCTTCATTTTAGAGATCACATAAGGACTTATAAGCAAAGATATTTTGCTGCTGAAGCTGTTGAAGAAGCAGCAGAAGAGAGTTTCAACTACAATAACTGTGAAGCTGAAGAAGATGGTTCATGTGCTGATGGAATGAGACTAGTTCAGCTTCTGATTGCATGTGCTGAAGCGGTGGCGTGTCGCGACAAATCGCACGCTTCGGTTTTGTTGTCTGAACTTAAATCGAATGCTTTGGTGTTTGGATCGTCGTTCCAGAGAGTTGCTTCTTGTTTTGTTCAAGGATTAATAGAGAGACTAACTTTGATTCAACCAATTGGCAACAATTCTGTTGGATTGGATGGGAAATCGATGATGAACATAATGGATGCAGCATCAGAAGAAATGGAAGAAGCATTCAAGTTGGTTTATGAGATATGTCCACATATTCAGTTTGGACATTTTGTGGCTAATTCCATAATACTGGAAGCCTTTGAGGGTGAGAGTTTTGTTCATGTGGTTGACCTAGGCGTAAGTCTAGGTCTACCACATGGACACCAATGGCGAGGACTAATTCAAAGTCTCGCGAATCGATCTGGTAGCCAACGTGTTCTTCGTCGGCTTAGGATCACGGCGGTCGGTCTATGCATTGCTAGAATCCAAGTCATTGGTGAAGAACTCTCCATTTACGCGAAAAACTTGGGGATTCATTTGGAATTCTCAATTGTGGAGAAGAATTTGGAGAATCTGAAACCTGAAGATATAAAAGTGAATGAAAAAGAGGTTCTTGTGGTTAACAGCATTCTTCAATTGCATTGTGTTGTTAAAGAGAGCCGTGGCGCGTTGAATTCGGTTCTACAAATGATCCACGGTCTTTCTCCGAAAGTGTTGGTGATGGTTGAGCAAGATTCAGGTCACAATGGACCTTTTTTTCTTGGTAGGTTTATGGAATCATTGCATTATTATTCTGCTATTTTTGACTCATTGGATGCTATGCTACCAAAATATGATACAAAAAGAGCAAAAATGGAGCAGTTTTATTTTGCTGAGGAGATAAAGAACATTGTGAGCTGTGAAGGACCATTGAGGATGGAGAGGCATGAGAAAGTTGATCAATGGAGGAGGAGAATGAGTAGGGCTGGATTTCAAGGTTCGCCTATTAAGATGGTGGTTCAAGCTAAACAGTGGCTTTTGAAGAATAAGGTTTGTGATGGATATATTGTTGTGGAAGAGAAAGGGTGTTTGGTTCTTGGATGGAAATCAAAGCCTATTGTTGCAGTTTCTTGCTGGAAATGTTGA 1584 0.399 MSPSLYYPVTTTFKNEVEYLENDENPLMGCYASLCPNLPILENSASSSWILPFPDHETETIRDHKKVKRSTVTIPIWFANFSSHSNSFFNSINSSNSVSSIPRLHFRDHIRTYKQRYFAAEAVEEAAEESFNYNNCEAEEDGSCADGMRLVQLLIACAEAVACRDKSHASVLLSELKSNALVFGSSFQRVASCFVQGLIERLTLIQPIGNNSVGLDGKSMMNIMDAASEEMEEAFKLVYEICPHIQFGHFVANSIILEAFEGESFVHVVDLGVSLGLPHGHQWRGLIQSLANRSGSQRVLRRLRITAVGLCIARIQVIGEELSIYAKNLGIHLEFSIVEKNLENLKPEDIKVNEKEVLVVNSILQLHCVVKESRGALNSVLQMIHGLSPKVLVMVEQDSGHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGFQGSPIKMVVQAKQWLLKNKVCDGYIVVEEKGCLVLGWKSKPIVAVSCWKC 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03135 527 ProSiteProfiles GRAS family profile. 141 526 IPR005202 -
Vifa4g03135 527 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 122 521 IPR005202 -
Vifa4g03135 527 Pfam GRAS domain family 150 526 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03135 Vifa-Chr4 993685104 993686687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03135 147 526 GRAS Transcription Factor Family AT1G66350 37.760 1.18e-74 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa4g03135 GRAS 1.1e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03135 - - gmx:100813548 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03135 4 993685104 993686687 Vifa4g03135 4 993685104 993686687 ECH