Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03129 ATGAATATTCTCTTATCTTTAGATCATCCCTCTATTGTTGATGTTAAAGAAGTAGTGGTGGATGATGATGATAGGGATGATGGTACTTATATGGTAATGGAGCATATGCAGTATGACCTCAAACAGTTGATGGAGGCAAAGAATCATCCTTTTAGTTTGGGTGAAATAAAATCCTTCATGAAGCAACTTCTGGGAGGTGTCAAGTATCTCCATGATAACTGGATTCTCCATAGAGATTTGAAGACATCTAACATCCTGATGAATAAAGAAGGGCATTTGAAAATATGTGACTTTGGAATGTCAAGGCAGTACGGAAGCCCACTTAAGCCATATACTTCTCTTGTGGTTACATTATGGTACAGAGCACCCGAACTTTTGTTGGGCGCTAAAAAATACTCCAAAGCAATTGATATGTGGTCATTGGGCTGTATAATGGCTGAACTATTTTCCAGGGAGCCTCTTTTCAGGGGTAAAACTGAAATCGAACAACTTGATAAGATTTTTCGAACCCTTGGTACACCAGATGAGAAAATATGGCCAGGATTTTCCAAATTGCCTGGGTCTAAAGCAAATTTTGTCAAGCAACGGTGTAGTATGCTAAGGATGAAGTTTCCAGCTGCGTCTTTCACTGGTTTGCCAGTTTTATCTGAGTCAGGATTTGACTTGTTGAGTAAGCTTCTAGCTTATGACCCTGACAAGAGGATATCTGCTGAAGCTGCTCTGCAACATGATTGGTTTCAATGA 744 0.3965 MNILLSLDHPSIVDVKEVVVDDDDRDDGTYMVMEHMQYDLKQLMEAKNHPFSLGEIKSFMKQLLGGVKYLHDNWILHRDLKTSNILMNKEGHLKICDFGMSRQYGSPLKPYTSLVVTLWYRAPELLLGAKKYSKAIDMWSLGCIMAELFSREPLFRGKTEIEQLDKIFRTLGTPDEKIWPGFSKLPGSKANFVKQRCSMLRMKFPAASFTGLPVLSESGFDLLSKLLAYDPDKRISAEAALQHDWFQ 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03129 247 Gene3D Phosphorylase Kinase; domain 1 2 35 - -
Vifa4g03129 247 Pfam Protein kinase domain 2 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03129 247 SMART serkin_6 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03129 247 PANTHER CELL DIVISION PROTEIN KINASE 2 246 - -
Vifa4g03129 247 FunFam Cyclin-dependent kinase G-2 38 247 - -
Vifa4g03129 247 ProSitePatterns Serine/Threonine protein kinases active-site signature. 75 87 IPR008271 GO:0004672|GO:0006468
Vifa4g03129 247 Gene3D Transferase(Phosphotransferase) domain 1 36 247 - -
Vifa4g03129 247 SUPERFAMILY Protein kinase-like (PK-like) 2 247 IPR011009 -
Vifa4g03129 247 ProSiteProfiles Protein kinase domain profile. 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03129 Vifa-Chr4 992038957 992040092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03129 1 247 Core Cell Cycle Gene Families AT3G48750 42.972 5.94e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vifa4g03129 Pkinase 1e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03129 K08818 - gmx:100814438 384.415