Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03123 ATGAATGTTACTTTTCAGGAATCTGAGTCTTTTTATCCCAATCCTCAGCTTCAGGGGGAGAATAATCAAGAAGCTGAGTCTTCAGAGTTGTTTGTCCTTCTTGTTATTCCTCTAATACCGGACCCAAAGCCGCCTCCTGAGTTGTCTGAGCCCTTGATGCCTAATGAGGATGGTGGTGATATACGAATATCGGTGCATAATAATGTTGACAGATACAAGTTACAATTCCAGCGAAAAAGGTGGAAAGATAAACCTGTTCTGCCCCAACAAGTCCAATCGTCTGAACCTGAGGTAAGTGTTCCTAATCCTGAGCTTAGTAATTCTTGTGAGCCAAACCTTGATGACCTACCTATTGCTTTGAGAAAAGAAAAAAGGTCTTGTATCAAATATCCTATATCCCAGTTTGTGTCTACTGGAAAGCTTTATGTGCAACATCAGAGTTTTATTTCAGCTATTGACTCTATTGGAGTCCCTGCATTAGTCATCCCAGTGCTGGATTCTCAAACACCAATTTTTGCATCGTCGTTTACAATGGAGCTTGTAAGAAAACGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTAAAAGTATTTAGAACAAGGAAGAAGTTTGTAGCTGGGCCATTTGAGATAGAGCCTATCAGAGTGAGCCATTCTATTCCGGATTGCTGTGGATTAGTTCTTCGTTGTTCTGATGGTACTATTCTTCATACAGGGGATTGGAAGATAGATGAAACACCATTAGATGGTAAAGTTTTCGATCGTGAAGCTCTAGAGGAACTCTCCAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACAATCACCTGGAAGGACAATGAGTGAGTCTGTCGTAGCTGATGCATTATTGAGGCATATTTCAGCTGCCAAAGGAAGGGTTATAACAACCCAGTTTTCATCTAACATTAATCGCCTAGGAAGTGTGAAAGCTGCTGCTGATTTGACTGACAGAAAGTTGGTGTTTGCTGGCATGTCTTTAAGGACATATTTGGATGCAGCTTGGAAGGATGGAAAGTCTCCAATTGATCCATCCACTTTGGTGAAACTAGAGGATATTGATGCTTATGCGCCCAAGGATTTGTTGATCGTGACTACGGGTTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAATAGTCATGCTTTCAAACTGACAAAGGAAGACGTTCTGTTGTATTCTGCTAAGATTATCCCTGGTAACGAGTCTCGTGTTATGGAAATGCTAAACCGAATATCAGAGATTGGATCAACAATAGTCATGGGGAAGAAGGAATGTCTACACACATCTGGTCATGCGTATCATGGTGAATTGGAGGAAGTGCTCAGAATTGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTATTGTTCTTGAAGGAGCATGAGTTACTTGGAAAATCAACTGGCATTCAACACACTTCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTAAGAAACAGAAAAGTTCTTTCTAATGGATTTATTACCCTTGGAAAAGAGAATTTGCAGTTGAAGTATAGCGACGGTGACAAAGCATTTGGTTCATCAAGCGAACTGTTCATTGATGAAAGATTGAGAATTGCATTAGACGGTATCATTGTCGTAAGCATGGAAGTATGTCGCCCTCACAGTTTAGACAGTTCGGTTGAAAACACCTTAAAAGGAAAGATAAGAATTACCACAAGATGCCTGTGGCTTGACAAAGGGAAGCTGTTGGACGCACTCCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTAAACTGCCCACTTGATCACGTGGAAAAAACTGTATCTGAGATGTTAAGGAAAATGGTGAGGAAGTATAGTGGCAAACGGCCTGATGTTATTGCAATTGCTACAGAAAATCCTGCAGCTATTCTTGCCACTGAGATAAACACAAGGTTGTCTGGAAAATCCTATGTAGGGGGGATATCAACTTTCAGAAACGCAGTGCATCGACTCGAGAGAGAAAATCAGTCTACCAAACTGCAAATGAGAGATGATGATAATGATGTTGAAGGTTTTCTACCTAAGGAAGACGCCGCTACCTCAAATAGAGCTGCGAGTAATATGTCTGAAACAGAGGATGGTCCTGAAGATGCTGAAACCAAATCAATGAAGAGAAACAAATGGAAAGAGGAGGAAGTTAAGAAGTTGATTGGTGTGCGCAGAGAATTTGAGGGCATATATCAATTAGTGAAGGGAAATAATGTCTTCTGGGAAGAAATATCCAAGAACTTGTTGGCTTATGGTATCAACAAAAATCCTGGGCAGTGTAGATCTATGTGGACATCTCTTTTACAAAAATATGAGCAGGAGATTAAAAATGAGAACAGAGAAAAAAGATGGCTATATCTGGAAGACATGGAAAGGGTTCTGTCCGTTATCGAGGCACCAGCAAAAATATAA 2472 0.4061 MNVTFQESESFYPNPQLQGENNQEAESSELFVLLVIPLIPDPKPPPELSEPLMPNEDGGDIRISVHNNVDRYKLQFQRKRWKDKPVLPQQVQSSEPEVSVPNPELSNSCEPNLDDLPIALRKEKRSCIKYPISQFVSTGKLYVQHQSFISAIDSIGVPALVIPVLDSQTPIFASSFTMELVRKRLKDHGIFVPSRLKVFRTRKKFVAGPFEIEPIRVSHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVQSPGRTMSESVVADALLRHISAAKGRVITTQFSSNINRLGSVKAAADLTDRKLVFAGMSLRTYLDAAWKDGKSPIDPSTLVKLEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGNSHAFKLTKEDVLLYSAKIIPGNESRVMEMLNRISEIGSTIVMGKKECLHTSGHAYHGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIQHTSVIKNGEMLGVSHLRNRKVLSNGFITLGKENLQLKYSDGDKAFGSSSELFIDERLRIALDGIIVVSMEVCRPHSLDSSVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLDHVEKTVSEMLRKMVRKYSGKRPDVIAIATENPAAILATEINTRLSGKSYVGGISTFRNAVHRLERENQSTKLQMRDDDNDVEGFLPKEDAATSNRAASNMSETEDGPEDAETKSMKRNKWKEEEVKKLIGVRREFEGIYQLVKGNNVFWEEISKNLLAYGINKNPGQCRSMWTSLLQKYEQEIKNENREKRWLYLEDMERVLSVIEAPAKI 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03123 823 PANTHER RIBONUCLEASE J 153 690 - -
Vifa4g03123 823 SMART sant 728 790 IPR001005 -
Vifa4g03123 823 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 439 476 IPR011108 -
Vifa4g03123 823 ProSiteProfiles Myb-like domain profile. 724 788 IPR001005 -
Vifa4g03123 823 Coils Coil 665 685 - -
Vifa4g03123 823 Pfam Myb/SANT-like DNA-binding domain 729 812 IPR044822 -
Vifa4g03123 823 MobiDBLite consensus disorder prediction 1 24 - -
Vifa4g03123 823 MobiDBLite consensus disorder prediction 87 109 - -
Vifa4g03123 823 Gene3D - 162 500 IPR036866 -
Vifa4g03123 823 SUPERFAMILY Metallo-hydrolase/oxidoreductase 167 498 IPR036866 -
Vifa4g03123 823 CDD GT1 730 792 - -
Vifa4g03123 823 MobiDBLite consensus disorder prediction 85 109 - -
Vifa4g03123 823 Coils Coil 781 808 - -
Vifa4g03123 823 Gene3D - 732 793 - -
Vifa4g03123 823 Gene3D - 285 435 IPR042173 -
Vifa4g03123 823 MobiDBLite consensus disorder prediction 679 729 - -
Vifa4g03123 823 MobiDBLite consensus disorder prediction 679 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03123 Vifa-Chr4 991569141 991593427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03123 716 814 Trihelix Transcription Factor Family AT1G13450 28.155 1.87e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa4g03123 Myb_DNA-bind_4 3.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03123 - - cam:101513472 1117.83