Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03121 ATGCCTAATGAGGATGGTGGTGATATACGAATATCGGTGCATAATAATGTTGACAGATACAAGTTACAATTCCAGCGAAAAAGGTGGAAAGATAAACCTGTTCTGCCCCAACAAGTCCAATCGTCTGAACCTGAGGTAAGTGTTCCTAATCCTGAGCTTAGTAATTCTTGTGAGCCAAACCTTGATGACCTACCTATTGCTTTGAGAAAAGAAAAAAGGTCTTGTATCAAATATCATATATCCCAGTTTGTGTCTACTGGAAAGCTTTATGTGCAACATCAGAGTTTTATTTCAGCTATTGACTCTATTGGAGTCCCTGCATTAGTCATCCCAGTGCTGGATTCTCAAACACCAATTTTTGCATCGTCGTTTACAATGGAGCTTGTAAGAAAACGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTAAAAGTATTTAGAACAAGGAAGAAGTTTGTAGCTGGGCCATTTGAGATAGAGCCTATCAGAGTGAGCCATTCTATTCCGGATTGCTGTGGATTAGTTCTTCGTTGTTCTGATGGTACTATTCTTCATACAGGGGATTGGAAGATAGATGAAACACCATTAGATGGTAAAGTTTTCGATCGTGAAGCTCTAGAGGAACTCTCCAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACAATCACCTGGAAGGACAATGAGTGAGTCTGTCGTAGCTGATGCATTATTGAGGCATATTTCAGCTGCCAAAGGAAGGGTTATAACAACCCAGTTTTCATCTAACATTAATCGCCTAGGAAGTGTGAAAGCTGCTGCTGATTTGACTGACAGAAAGTTGGTGTTTGCTGGCATGTCTTTAAGGACATATTTGGATGCAGCTTGGAAGGATGGAAAGTCTCCAATTGATCCATCCACTTTGGTGAAACTAGAGGATATTGATGCTTATGCGCCCAAGGATTTGTTGATCGTGACTACGGGTTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAATAGTCATGCTTTCAAACTGACAAAGGAAGACGTTCTGTTGTATTCTGCTAAGATTATCCCTGGTAACGAGTCTCGTGTTATGGAAATGCTAAACCGAATATCAGAGATTGGATCAACAATAGTCATGGGGAAGAAGGAATGTCTACACACATCTGGTCATGCGTATCATGGTGAATTGGAGGAAGTGCTCAGAATTGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTATTGTTCTTGAAGGAGCATGAGTTACTTGGAAAATCAACTGGCATTCAACACACTTCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTAAGAAACAGAAAAGTTCTTTCTAATGGATTTATTACCCTTGGAAAAGAGAATTTGCAGTTGAAGTATAGCGACGGTGACAAAGCATTTGGTTCATCAAGCGAACTGTTCATTGATGAAAGATTGAGAATTGCATTAGACGGTATCATTGTCGTAAGCATGGAAGTATGTCGCCCTCACAGTTTAGACAGTTCGGTTGAAAACACCTTAAAAGGAAAGATAAGAATTACCACAAGATGCCTGTGGCTTGACAAAGGGAAGCTGTTGGACGCACTCCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTAAACTGCCCACTTGATCACGTGGAAAAAACTGTATCTGAGATGTTAAGGAAAATGGTGAGGAAGTATAGTGGCAAACGGCCTGATGTTATTGCAATTGCTACAGAAAATCCTGCAGCTATTCTTGCCACTGAGATAAACACAAGGTTGTCTGGAAAATCCTATGTAGGGGGGATATCAACTTTCAGAAACGCAGTGCATCGACTCGAGAGAGAAAATCAGTCTACCAAACTGCAAATGAGAGATGATGATAATGATGTTGAAGGTTTTCTACCTAAGGAAGACGCCGCTACCTCAAATAGAGCTGCGAGTAATATGTCTGAAACAGAGGATGGTCCTGAAGATGCTGAAACCAAATCAATGAAGAGAAACAAATGGAAAGAGGAGGAAGTTAAGAAGTTGATTGGTGTGCGCAGAGAATTTGAGGGCATATATCAATTAGTGAAGGGAAATAATGTCTTCTGGGAAGAAATATCCAAGAACTTGTTGGCTTATGGTATCAACAAAAATCCTGGGCAGTGTAGATCTATGTGGACATCTCTTTTACAAAAATATGAGCAGGAGATTAAAAATGAGAACAGAGAAAAAAGATGGCTATATCTGGAAGACATGGAAAGGGTTCTGTCCGTTATCGAGGCACCAGCAAAAATATAA 2316 0.4033 MPNEDGGDIRISVHNNVDRYKLQFQRKRWKDKPVLPQQVQSSEPEVSVPNPELSNSCEPNLDDLPIALRKEKRSCIKYHISQFVSTGKLYVQHQSFISAIDSIGVPALVIPVLDSQTPIFASSFTMELVRKRLKDHGIFVPSRLKVFRTRKKFVAGPFEIEPIRVSHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVQSPGRTMSESVVADALLRHISAAKGRVITTQFSSNINRLGSVKAAADLTDRKLVFAGMSLRTYLDAAWKDGKSPIDPSTLVKLEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGNSHAFKLTKEDVLLYSAKIIPGNESRVMEMLNRISEIGSTIVMGKKECLHTSGHAYHGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIQHTSVIKNGEMLGVSHLRNRKVLSNGFITLGKENLQLKYSDGDKAFGSSSELFIDERLRIALDGIIVVSMEVCRPHSLDSSVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLDHVEKTVSEMLRKMVRKYSGKRPDVIAIATENPAAILATEINTRLSGKSYVGGISTFRNAVHRLERENQSTKLQMRDDDNDVEGFLPKEDAATSNRAASNMSETEDGPEDAETKSMKRNKWKEEEVKKLIGVRREFEGIYQLVKGNNVFWEEISKNLLAYGINKNPGQCRSMWTSLLQKYEQEIKNENREKRWLYLEDMERVLSVIEAPAKI 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03121 771 Gene3D - 110 448 IPR036866 -
Vifa4g03121 771 MobiDBLite consensus disorder prediction 627 677 - -
Vifa4g03121 771 MobiDBLite consensus disorder prediction 627 645 - -
Vifa4g03121 771 CDD GT1 678 740 - -
Vifa4g03121 771 MobiDBLite consensus disorder prediction 35 55 - -
Vifa4g03121 771 SMART sant 676 738 IPR001005 -
Vifa4g03121 771 Gene3D - 233 383 IPR042173 -
Vifa4g03121 771 Coils Coil 613 633 - -
Vifa4g03121 771 PANTHER RIBONUCLEASE J 101 638 - -
Vifa4g03121 771 Coils Coil 729 756 - -
Vifa4g03121 771 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 387 424 IPR011108 -
Vifa4g03121 771 Gene3D - 680 741 - -
Vifa4g03121 771 ProSiteProfiles Myb-like domain profile. 672 736 IPR001005 -
Vifa4g03121 771 MobiDBLite consensus disorder prediction 33 55 - -
Vifa4g03121 771 Pfam Myb/SANT-like DNA-binding domain 677 760 IPR044822 -
Vifa4g03121 771 SUPERFAMILY Metallo-hydrolase/oxidoreductase 115 446 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03121 Vifa-Chr4 991524741 991548798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03121 664 762 Trihelix Transcription Factor Family AT1G13450 28.155 2.14e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa4g03121 Myb_DNA-bind_4 2.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03121 - - cam:101513472 1117.83