Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03120 ATGCCTAATGAGGATGGTGGTGATATACGAATATCGGTGCATAATAATGTTGACAGATACAAGTTACAATTCCAGCGAAAAAGGTGGAAAGATAAACCTGTTCTGCCCCAACAAGTCCAATCGTCTGAACCTGAGGTAAGTGTTCCTAATCCTGAGCTTAGTAATTCTTGTGAGCCAAACCTTGATGACCTACCTATTGCTTTGAGAAAAGAAAAAAGGTCTTGTATCAAATATCATATATCCCAGTTTGTGTCTACTGGAAAGCTTTATGTGCAACATCAGAGTTTTATTTCAGCTATTGACTCTATTGGAGTCCCTGCATTAGTCATCCCAGTGCTGGATTCTCAAACACCAATTTTTGCATCGTCGTTTACAATGGAGCTTGTAAGAAAACGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTAAAAGTATTTAGAACAAGGAAGAAGTTTGTAGCTGGGCCATTTGAGATAGAGCCTATCAGAGTGAGCCATTCTATTCCGGATTGCTGTGGATTAGTTCTTCGTTGTTCTGATGGTACTATTCTTCATACAGGGGATTGGAAGATAGATGAAACACCATTAGATGGTAAAGTTTTCGATCGTGAAGCTCTAGAGGAACTCTCCAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACAATCACCTGGAAGGACAATGAGTGAGTCTGTCGTAGCTGATGCATTATTGAGGCATATTTCAGCTGCCAAAGGAAGGGTTATAACAACCCAGTTTTCATCTAACATTAATCGCCTAGGAAGTGTGAAAGCTGCTGCTGATTTGACTGACAGAAAGTTGGTGTTTGCTGGCATGTCTTTAAGGACATATTTGGATGCAGCTTGGAAGGATGGAAAGTCTCCAATTGATCCATCCACTTTGGTGAAACTAGAGGATATTGATGCTTATGCGCCCAAGGATTTGTTGATCGTGACTACGGGTTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAATAGTCATGCTTTCAAACTGACAAAGGAAGACGTTCTGTTGTATTCTGCTAAGATTATCCCTGGTAACGAGTCTCGTGTTATGGAAATGCTAAACCGAATATCAGAGATTGGATCAACAATAGTCATGGGGAAGAAGGAATGTCTACACACATCTGGTCATGCGTATCATGGTGAATTGGAGGAAGTGCTCAGAATTGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTATTGTTCTTGAAGGAGCATGAGTTACTTGGAAAATCAACTGGCATTCAACACACTTCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTAAGAAACAGAAAAGTTCTTTCTAATGGATTTATTACCCTTGGAAAAGAGAATTTGCAGTTGAAGTATAGCGACGGTGACAAAGCATTTGGTTCATCAAGCGAACTGTTCATTGATGAAAGATTGAGAATTGCATTAGACGGTATCATTGTCGTAAGCATGGAAGTATGTCGCCCTCACAGTTTAGACAGTTCGGTTGAAAACACCTTAAAAGGAAAGATAAGAATTACCACAAGATGCCTGTGGCTTGACAAAGGGAAGCTGTTGGACGCACTCCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTAAACTGCCCACTTGATCACGTGGAAAAAACTGTATCTGAGATGTTAAGGAAAATGGTGAGGAAGTATAGTGGCAAACGGCCTGATGTTATTGCAATTGCTACAGAAAATCCTGCAGCTATTCTTGCCACTGAGATAAACACAAGGTTGTCTGGAAAATCCTATGTAGGGGGGATATCAACTTTCAGAAACGCAGTGCATCGACTCGAGAGAGAAAATCAGTCTACCAAACTGCAAATGAGAGATGATGATAATGATGTTGAAGGTTTTCTACCTAAGGAAGACGCCGCTACCTCAAATAGAGCTGCGAGTAATATGTCTGAAACAGAGGATGGTCCTGAAGATGCTGAAACCAAATCAATGAAGAGAAACAAATGGAAAGAGGAGGAAGTTAAGAAGTTGATTGGTGTGCGCAGAGAATTTGAGGGCATATATCAATTAGTGAAGGGAAATAATGTCTTCTGGGAAGAAATATCCAAGAACTTGTTGGCTTATGGTATCAACAAAAATCCTGGGCAGTGTAGATCTATGTGGACATCTCTTTTACAAAAATATGAGGAGATTAAAAATGAGAACAGAGAAAAAAGATGGCTATATCTGGAAGACATGGAAAGGGTTCTGTCCGTTATCGAGGCACCAGCAAAAATATAA 2313 0.4029 MPNEDGGDIRISVHNNVDRYKLQFQRKRWKDKPVLPQQVQSSEPEVSVPNPELSNSCEPNLDDLPIALRKEKRSCIKYHISQFVSTGKLYVQHQSFISAIDSIGVPALVIPVLDSQTPIFASSFTMELVRKRLKDHGIFVPSRLKVFRTRKKFVAGPFEIEPIRVSHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVQSPGRTMSESVVADALLRHISAAKGRVITTQFSSNINRLGSVKAAADLTDRKLVFAGMSLRTYLDAAWKDGKSPIDPSTLVKLEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGNSHAFKLTKEDVLLYSAKIIPGNESRVMEMLNRISEIGSTIVMGKKECLHTSGHAYHGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIQHTSVIKNGEMLGVSHLRNRKVLSNGFITLGKENLQLKYSDGDKAFGSSSELFIDERLRIALDGIIVVSMEVCRPHSLDSSVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLDHVEKTVSEMLRKMVRKYSGKRPDVIAIATENPAAILATEINTRLSGKSYVGGISTFRNAVHRLERENQSTKLQMRDDDNDVEGFLPKEDAATSNRAASNMSETEDGPEDAETKSMKRNKWKEEEVKKLIGVRREFEGIYQLVKGNNVFWEEISKNLLAYGINKNPGQCRSMWTSLLQKYEEIKNENREKRWLYLEDMERVLSVIEAPAKI 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03120 770 Gene3D - 110 448 IPR036866 -
Vifa4g03120 770 Pfam Myb/SANT-like DNA-binding domain 677 759 IPR044822 -
Vifa4g03120 770 MobiDBLite consensus disorder prediction 627 645 - -
Vifa4g03120 770 MobiDBLite consensus disorder prediction 627 677 - -
Vifa4g03120 770 MobiDBLite consensus disorder prediction 35 55 - -
Vifa4g03120 770 SMART sant 676 738 IPR001005 -
Vifa4g03120 770 Gene3D - 233 383 IPR042173 -
Vifa4g03120 770 PANTHER RIBONUCLEASE J 101 638 - -
Vifa4g03120 770 Coils Coil 613 633 - -
Vifa4g03120 770 CDD GT1 678 743 - -
Vifa4g03120 770 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 387 424 IPR011108 -
Vifa4g03120 770 ProSiteProfiles Myb-like domain profile. 672 736 IPR001005 -
Vifa4g03120 770 MobiDBLite consensus disorder prediction 33 55 - -
Vifa4g03120 770 Gene3D - 680 741 - -
Vifa4g03120 770 SUPERFAMILY Metallo-hydrolase/oxidoreductase 115 446 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03120 Vifa-Chr4 991524741 991548798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03120 664 761 Trihelix Transcription Factor Family AT1G13450 29.126 1.76e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa4g03120 Myb_DNA-bind_4 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03120 - - cam:101513472 1122.46