Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03117 ATGAATGTTACTTTTCAGGAATCTGAGTCTTTTTATCCCAATCCTCAGCTTCAGGGGGAGAATAATCAAGAAGCTGAGTCTTCAGAGTTGTTTGTCCTTCTTGTTATTCCTCTAATACCGGACCCAAAGCCGCCTCCTGAGTTGTCTGAGCCCTTGATGCCTAATGAGGATGGTGGTGATATACGAATATCGGTGCATAATAATGTTGACAGATACAAGTTACAATTCCAGCGAAAAAGGTGGAAAGATAAACCTGTTCTGCCCCAACAAGTCCAATCGTCTGAACCTGAGGTAAGTGTTCCTAATCCTGAGCTTAGTAATTCTTGTGAGCCAAACCTTGATGACCTACCTATTGCTTTGAGAAAAGAAAAAAGGTCTTGTATCAAATATCATATATCCCAGTTTGTGTCTACTGGAAAGCTTTATGTGCAACATCAGAGTTTTATTTCAGCTATTGACTCTATTGGAGTCCCTGCATTAGTCATCCCAGTGCTGGATTCTCAAACACCAATTTTTGCATCGTCGTTTACAATGGAGCTTGTAAGAAAACGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTAAAAGTATTTAGAACAAGGAAGAAGTTTGTAGCTGGGCCATTTGAGATAGAGCCTATCAGAGTGAGCCATTCTATTCCGGATTGCTGTGGATTAGTTCTTCGTTGTTCTGATGGTACTATTCTTCATACAGGGGATTGGAAGATAGATGAAACACCATTAGATGGTAAAGTTTTCGATCGTGAAGCTCTAGAGGAACTCTCCAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACAATCACCTGGAAGGACAATGAGTGAGTCTGTCGTAGCTGATGCATTATTGAGGCATATTTCAGCTGCCAAAGGAAGGGTTATAACAACCCAGTTTTCATCTAACATTAATCGCCTAGGAAGTGTGAAAGCTGCTGCTGATTTGACTGACAGAAAGTTGGTGTTTGCTGGCATGTCTTTAAGGACATATTTGGATGCAGCTTGGAAGGATGGAAAGTCTCCAATTGATCCATCCACTTTGGTGAAACTAGAGGATATTGATGCTTATGCGCCCAAGGATTTGTTGATCGTGACTACGGGTTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAATAGTCATGCTTTCAAACTGACAAAGGAAGACGTTCTGTTGTATTCTGCTAAGATTATCCCTGGTAACGAGTCTCGTGTTATGGAAATGCTAAACCGAATATCAGAGATTGGATCAACAATAGTCATGGGGAAGAAGGAATGTCTACACACATCTGGTCATGCGTATCATGGTGAATTGGAGGAAGTGCTCAGAATTGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTATTGTTCTTGAAGGAGCATGAGTTACTTGGAAAATCAACTGGCATTCAACACACTTCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTAAGAAACAGAAAAGTTCTTTCTAATGGATTTATTACCCTTGGAAAAGAGAATTTGCAGTTGAAGTATAGCGACGGTGACAAAGCATTTGGTTCATCAAGCGAACTGTTCATTGATGAAAGATTGAGAATTGCATTAGACGGTATCATTGTCGTAAGCATGGAAGTATGTCGCCCTCACAGTTTAGACAGTTCGGTTGAAAACACCTTAAAAGGAAAGATAAGAATTACCACAAGATGCCTGTGGCTTGACAAAGGGAAGCTGTTGGACGCACTCCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTAAACTGCCCACTTGATCACGTGGAAAAAACTGTATCTGAGATGTTAAGGAAAATGGTGAGGAAGTATAGTGGCAAACGGCCTGATGTTATTGCAATTGCTACAGAAAATCCTGCAGCTATTCTTGCCACTGAGATAAACACAAGGTTGTCTGGAAAATCCTATGTAGGGGGGATATCAACTTTCAGAAACGCAGTGCATCGACTCGAGAGAGAAAATCAGTCTACCAAACTGCAAATGAGAGATGATGATAATGATGTTGAAGGTTTTCTACCTAAGGAAGACGCCGCTACCTCAAATAGAGCTGCGAGTAATATGTCTGAAACAGAGGATGGTCCTGAAGATGCTGAAACCAAATCAATGAAGAGAAACAAATGGAAAGAGGAGGAAGTTAAGAAGTTGATTGGTGTGCGCAGAGAATTTGAGGGCATATATCAATTAGTGAAGGGAAATAATGTCTTCTGGGAAGAAATATCCAAGAACTTGTTGGCTTATGGTATCAACAAAAATCCTGGGCAGTGTAGATCTATGTGGACATCTCTTTTACAAAAATATGAGGAGATTAAAAATGAGAACAGAGAAAAAAGATGGCTATATCTGGAAGACATGGAAAGGGTTCTGTCCGTTATCGAGGCACCAGCAAAAATATAA 2469 0.4054 MNVTFQESESFYPNPQLQGENNQEAESSELFVLLVIPLIPDPKPPPELSEPLMPNEDGGDIRISVHNNVDRYKLQFQRKRWKDKPVLPQQVQSSEPEVSVPNPELSNSCEPNLDDLPIALRKEKRSCIKYHISQFVSTGKLYVQHQSFISAIDSIGVPALVIPVLDSQTPIFASSFTMELVRKRLKDHGIFVPSRLKVFRTRKKFVAGPFEIEPIRVSHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVQSPGRTMSESVVADALLRHISAAKGRVITTQFSSNINRLGSVKAAADLTDRKLVFAGMSLRTYLDAAWKDGKSPIDPSTLVKLEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGNSHAFKLTKEDVLLYSAKIIPGNESRVMEMLNRISEIGSTIVMGKKECLHTSGHAYHGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIQHTSVIKNGEMLGVSHLRNRKVLSNGFITLGKENLQLKYSDGDKAFGSSSELFIDERLRIALDGIIVVSMEVCRPHSLDSSVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLDHVEKTVSEMLRKMVRKYSGKRPDVIAIATENPAAILATEINTRLSGKSYVGGISTFRNAVHRLERENQSTKLQMRDDDNDVEGFLPKEDAATSNRAASNMSETEDGPEDAETKSMKRNKWKEEEVKKLIGVRREFEGIYQLVKGNNVFWEEISKNLLAYGINKNPGQCRSMWTSLLQKYEEIKNENREKRWLYLEDMERVLSVIEAPAKI 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03117 822 PANTHER RIBONUCLEASE J 153 690 - -
Vifa4g03117 822 SMART sant 728 790 IPR001005 -
Vifa4g03117 822 Pfam Myb/SANT-like DNA-binding domain 729 811 IPR044822 -
Vifa4g03117 822 ProSiteProfiles Myb-like domain profile. 724 788 IPR001005 -
Vifa4g03117 822 Coils Coil 665 685 - -
Vifa4g03117 822 MobiDBLite consensus disorder prediction 87 109 - -
Vifa4g03117 822 MobiDBLite consensus disorder prediction 1 24 - -
Vifa4g03117 822 CDD GT1 730 795 - -
Vifa4g03117 822 Gene3D - 732 793 - -
Vifa4g03117 822 Gene3D - 162 500 IPR036866 -
Vifa4g03117 822 SUPERFAMILY Metallo-hydrolase/oxidoreductase 167 498 IPR036866 -
Vifa4g03117 822 MobiDBLite consensus disorder prediction 85 109 - -
Vifa4g03117 822 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 439 476 IPR011108 -
Vifa4g03117 822 Gene3D - 285 435 IPR042173 -
Vifa4g03117 822 MobiDBLite consensus disorder prediction 679 729 - -
Vifa4g03117 822 MobiDBLite consensus disorder prediction 679 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03117 Vifa-Chr4 991479886 991504171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03117 716 813 Trihelix Transcription Factor Family AT1G13450 29.126 1.57e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa4g03117 Myb_DNA-bind_4 2.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03117 - - cam:101513472 1122.46