Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03106 ATGGACTCTCCCTCAGGCGCGCACTTCTCCGGCTGGCGCCCTTCATCCACGTCATCGTCTTCTTCTCACAGCGTCTTTCTCATCGGAGTGTCCGGAGGTACTGCATCGGGGAAAACCACAGTGTGTGACATGATTATTCAACAACTGCAAGATCATAGAGTTGTTCTAGTGAATCAGGATTCGTTTTATCGTGGTTTAACTAAAGATGAGTTGAAACTCGAGCATGAGTATAATTTTGATCATCCTAATGCATTTGATACGGAGCAACTTGTAGAAACACTCGTTAAACTTAAATCTGGACAGTCAGTTCAGGTTCCTGTTTATGATTTTAAGCTCCACCAGAGAGCTTCTGACAGATACCAACAGGTCAATGCATCTGAAGTAGTTATTTTGGAGGGTATATTGGTTTTTCACGAACAACGTGTCCGCAACTTGATGAATATGAAGATATTTGTCGATGCAGATCCTGATGTAAGGCTTTCCCGGAGAATAAGACGAGATACTGTTGAGAGGGGTAGAGATGTGCATTCTGTACTGGAACAGTATGCTAAATTTGTTAAGCCCGCCTTCGATGATTTTATTCTTCCATCCAAAAAGTATGCTGACATAATCATACCTCGTGGGGGAGATAATTGTGTAGCAATTGACTTGATCGTTCAACATATTCGCACTAAGCTTGGCCAACATAACCTCTGTAAGATATATCCAAATTTGCATGTGATACAGTCTACTTTCCAGACAAGAGGCATGCACACTCTAATTCGGGATACGGAAATATCCAAGCATGACTTTATTTTTTATTCAGATCGGCTAATTCGTTTGGTAGTGGAACATGGTCTTGGTTACTTGCCATTTACAGAAAAACAAGTTATCACACCTACAGGATCAATTTATATTGGAGTTGATTTTTGTAAGAAACTGTGTGGAGTATCTGTTATTCGAAGTGGTGAAAGCATGGAAAATGCTTTGCGTGCATGCTGTAAAGGAATAAAATTAGGAAAAATTCTCATCCACCGTGGAGGTGATGAAACCCAGCTTATTTATGAGAAGCTCCCTAAAGACATTTCTGAGAGACATGTTCTTCTCATGGACCCAGTACTTGGCACAGGTAACTCTGCCAGCCAAGCAATCGATCTTCTTATTAAGAAAGGAGTTCCAGAGTCCCGGATAATATTCCTTAACCTTGTCTCTGCTCCTGAGGGAATACAGTATGTATGTAAACGTTTTCCACACATTAAAGTTGTTACTTCGGAGATTGAAGAAGGACTAAATGACCAGTTCCGTGTCGTGCCTGGGTTAGGTGAATTTGGTGACCGGTATTTTGGTACAGATGAGTCTTAG 1341 0.4124 MDSPSGAHFSGWRPSSTSSSSSHSVFLIGVSGGTASGKTTVCDMIIQQLQDHRVVLVNQDSFYRGLTKDELKLEHEYNFDHPNAFDTEQLVETLVKLKSGQSVQVPVYDFKLHQRASDRYQQVNASEVVILEGILVFHEQRVRNLMNMKIFVDADPDVRLSRRIRRDTVERGRDVHSVLEQYAKFVKPAFDDFILPSKKYADIIIPRGGDNCVAIDLIVQHIRTKLGQHNLCKIYPNLHVIQSTFQTRGMHTLIRDTEISKHDFIFYSDRLIRLVVEHGLGYLPFTEKQVITPTGSIYIGVDFCKKLCGVSVIRSGESMENALRACCKGIKLGKILIHRGGDETQLIYEKLPKDISERHVLLMDPVLGTGNSASQAIDLLIKKGVPESRIIFLNLVSAPEGIQYVCKRFPHIKVVTSEIEEGLNDQFRVVPGLGEFGDRYFGTDES 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03106 446 PANTHER URIDINE KINASE 21 354 - -
Vifa4g03106 446 MobiDBLite consensus disorder prediction 1 22 - -
Vifa4g03106 446 FunFam Uridine kinase 22 228 - -
Vifa4g03106 446 Pfam Phosphoribulokinase / Uridine kinase family 27 213 IPR006083 GO:0005524|GO:0016301
Vifa4g03106 446 Pfam Uracil phosphoribosyltransferase 243 443 - -
Vifa4g03106 446 Gene3D - 22 228 IPR027417 -
Vifa4g03106 446 ProSiteProfiles UvrC family, homology region profile. 113 209 IPR001162 GO:0009381
Vifa4g03106 446 Gene3D - 229 443 IPR029057 -
Vifa4g03106 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 218 IPR027417 -
Vifa4g03106 446 PRINTS Uridine kinase signature 100 115 - -
Vifa4g03106 446 PRINTS Uridine kinase signature 25 42 - -
Vifa4g03106 446 PRINTS Uridine kinase signature 193 206 - -
Vifa4g03106 446 PRINTS Uridine kinase signature 55 66 - -
Vifa4g03106 446 PRINTS Uridine kinase signature 157 167 - -
Vifa4g03106 446 PRINTS Uridine kinase signature 171 182 - -
Vifa4g03106 446 NCBIfam uridine kinase 23 225 IPR000764 -
Vifa4g03106 446 FunFam Uridine kinase 229 443 - -
Vifa4g03106 446 SUPERFAMILY PRTase-like 228 444 IPR029057 -
Vifa4g03106 446 CDD UMPK 27 225 IPR000764 -
Vifa4g03106 446 CDD PRTases_typeI 298 416 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03106 Vifa-Chr4 990516055 990520554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03106 1 445 PRT Gene Family AT5G40870 75.424 0.0 724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03106 4 990516055 990520554 Vifa4g03106 4 990516055 990520554 ECH