LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g03104	ATGTCTTCCAAAAAATCTTCTTCCTCTGAAGATAATAATTCTACCTCACCAAAACGCCAAAAGGTTGACAATGGCGGTTCGCCGGAGAAACCGAGTATTCCAGAACGCCAAAAGGTCGAAAATGGCGGTTCGCCGGAGAAAACGAGTATTCCAGAACGCCAAAAGGTCGATAATGGTGGTTCGCCGGAGAAACTGAGTGTCCCTGAGCCGGTAGCTGATCCTGGACAATGCACCTCTCGCGATGCGGCTGATAGTGTGAAGACTCCAAGCAAGAGTGGCGCTACGCCGGAGGTTCCAGAGACTGTGCCGGGGGCTCCAAGATTAAGGCGGCCCACTGGAAGTGCACTTATGAGGTTAAATCGGTGGAATTTATTGGAAGGTGAAGCTGATACATGGGGCCGTTTGTTGTCGCAGACTGGAGAGAATCCAAATGTGGCTGTTTTCGGACCAAATTTTACAATTGGTTCCGGTAGAAGCTGCAACTTGATGTTGAAGGATCGGCCTTTATGTGAATGTTTTTGCGAGATCAGACGTGCCAAGTGCTCGGGAAGTGATGTAGCTGTGCTTGAAAGTACTGGTAGCAAAGGATCTGTGCTAGTAAATGGGTTACCTGTGAATAAGAATACCATAATTACGCTTTACTCGGGTGATGAGGTGGTTTTTGATGTGGTGGGAAATCATTTATATATTTTCCAGCAACTGAATATTGTGAATGCGGAATGTCAAAGTGACATTGAGACAATACTGAAATTGCGTTCTCCTCCTAAATTCAAAACAGACTACACTGAAATCTTTAGTTATTCTAGTCTTCGTGATGTTGAAGAAGTTATGTGCGATGGGTTGAAATTAGCTCCATTTAGTAGGAGTAATAGAGCAGCTATTATTGGAGCCAGTGACAAAAATACACCAATGGATTGTGATCTGGAGGCTCGCACAGAGGCATTCAATGTAAATCAGGAGGTATTGAAAGAAATATATGAGTCATTACACATGGACAAGTGTTCAGCATTTGAAGAAGATCTTAGTGCTGCAATACTGGATGGAAAAGAAATAGACATCTCTTTTGACAACTTCCCATACTATTTAAGTGCAAACACAAAGAATGTCTTGGTTACTGCATGCTTTATACACCTGAAGTATAAAGAACATCAAAAGTACACTCTAGATCTTACAACCATAAACCCTCGTATTTTGCTATTGGGACCAGCTGGATCAGAAATATATCAGGAGACGTTGGTAAAAGCACTTGCAAAACACTTTGGAGCTAAGTTGCTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTGCCTTCCAAGGAATCTGAGTTGCTCAAAGATGCATTGAACACTATAAAATCCTGCAGCAGCGCCAAACAAAGTTCTGTAATCACAGACATTGCTAGGACCATGGACCCATCAGCTAATGAAATAGAGACATCTACCTCTTCAGAGGCACCCACATCAAATGGCCTTGAGTCTCAACATAATTTGGATCGTCATAAAATACCATCAACCACTGTGACAGCCAAAAAATGCTTGTTCAGATTAGGTGATAGAGTGGAGTTTAGCTGCCCTTCTTCTGATGGCTTGTATGAAACATCTTCAAGGGGCCCACCTAATGGTTGTCGGGGGAAGATTGTCTTGCTATTTGATGATAATCCACACTCTAAAATTGGCGTGGAGTTTGATGAACTCATACATGACGGCATTGATCTTGGAGGTGCATGTGAGGTTGGCCGAGGCTTTTTCTGCAATGTCACCGATCTTCATTTGGAAAACAGTGGTGCGGCAGTACTGGACAAATTACTTATTGATTCATTGTTTGAGGTTGTTTATAGAGAGAGTAGAAGTGCACCATTCATTTTGTTCATGAAAGATGCCGAGAAGTCAATAGTTGGAAAGGGATGTCCATTTTCATTTAGACATAAACTTGATACACTTCCAAACAATGTGGTGGTAATAGGTTCACACACTCTTACTGACAATGACAATAGCAAGGAGAAGCTGCAGTCGCATCCCGCTGGTCTGCAGTCGCATCCCGCTGGTTTACTTTTTAAAACACTTGATGGCAGTAAGGCTGCATTTCTTGACTTGGCCAACTTGGGTAGTCCTGGACAATTGCATGACAAGGAAAGGGAAGTACCAAAGCTAAACGAAGCTTTAACTAATATTTTCCCTAATAAAATTAAAATTCACATGCCACAGGATGAGGTACTTCTAGCATCATGGAAGCAGCAACTGGATCGAGATGTAGAGGCTTTGAAAATAAAAGCAAATTTACATCAACTACACATTGTTTTGAGCCATTTTGGAATTGAATGTGAAGGACTTGAGACCTTGTGCGTTAAAGATCAGACACTTATGAATGAAAATGCGAAGAAGATCATTGGTTGGGCTCTAAGCCACCACCACATGCAGAATTTGGAAGCTAATCCAGATTCAAAGCTTATATTGTCGTGTGAGAACATCCATTATGGATACGGGATGTTGCAGTCTCTCCAAAATGAGTCAAAAGGCATGAAGAAGTCTCATAAGGATATTGTAACAGAAAATAATTTTGAAAAGAGACTTTTGGCTGATGTTATTCCACCAAGCGATATCAATGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTTAAGGATACGCTGAAGGAGTTGGTGATGCTTCCTTTGCAGAGGCCTGGGCTTTTTTGTAAAGGGCAATTAACCAAGCCATGCAAGGGTATCCTATTATTTGGCCCCCCTGGAACAGGCAAAACAATGCTTGCAAAGGCAATTGCAACTGAAGCTGGTGCAAATTTCATCAACCTTTCTATGTCAAAGATTATGTCTAAGTGGTTTGGTGAGGGTGAGAAGTACGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAGCTGCTCCTAGTGTTATATTTATTGATGAAGCTGATAGCATGTTGGGTCGAAGGGAAAATCCAAGGGAGCATGAGGCCATGCGGAAAATGAAAAATGAGTTCATGGTTAATTGGGATGGTTTACGTACAAAGGATTCTGAACGAGTTCTTGTGCTTGCTGCCACTAACAGGCCTTTTGACCTAGACGAGGCTGTCATTAGGAGGCTACCTCGAAGATTGATGATAAATTTGCCAGATGCTCCAAATAGAGCAAAAATATTGAAAGTTATACTTACGAAAGAGGAATTGTCTCCAGATGTTGATCTGGATGCAGTAGCAAGCATGACTGATGGATATTCCGGAAGTGATCTTAAGAATTTGTGCGCAACTGCTGCACATTGTCCAATTAAAGAGATATTGGAAAAGGAAAAAAAGGAACGTGCTAGTGCTCTAGAAGAAGGTCGACCTGCTCCTGCATTATATAACAGTGGGGACATCCGATCTTTAAACATGGGAGACTTTAAACATGCTCTTCAACAGGTGTGTGCCAGTGTTTCTTCTGAGTCAGTAAATATGACCGAGCTTGTACAGTGGAATGAACTATACGGTGAAGGTGGTTCAAGAGTAAAGAAAACACCCAGCTATTTCATGTAG	3525	0.4184	MSSKKSSSSEDNNSTSPKRQKVDNGGSPEKPSIPERQKVENGGSPEKTSIPERQKVDNGGSPEKLSVPEPVADPGQCTSRDAADSVKTPSKSGATPEVPETVPGAPRLRRPTGSALMRLNRWNLLEGEADTWGRLLSQTGENPNVAVFGPNFTIGSGRSCNLMLKDRPLCECFCEIRRAKCSGSDVAVLESTGSKGSVLVNGLPVNKNTIITLYSGDEVVFDVVGNHLYIFQQLNIVNAECQSDIETILKLRSPPKFKTDYTEIFSYSSLRDVEEVMCDGLKLAPFSRSNRAAIIGASDKNTPMDCDLEARTEAFNVNQEVLKEIYESLHMDKCSAFEEDLSAAILDGKEIDISFDNFPYYLSANTKNVLVTACFIHLKYKEHQKYTLDLTTINPRILLLGPAGSEIYQETLVKALAKHFGAKLLIFDSHLLLGGLPSKESELLKDALNTIKSCSSAKQSSVITDIARTMDPSANEIETSTSSEAPTSNGLESQHNLDRHKIPSTTVTAKKCLFRLGDRVEFSCPSSDGLYETSSRGPPNGCRGKIVLLFDDNPHSKIGVEFDELIHDGIDLGGACEVGRGFFCNVTDLHLENSGAAVLDKLLIDSLFEVVYRESRSAPFILFMKDAEKSIVGKGCPFSFRHKLDTLPNNVVVIGSHTLTDNDNSKEKLQSHPAGLQSHPAGLLFKTLDGSKAAFLDLANLGSPGQLHDKEREVPKLNEALTNIFPNKIKIHMPQDEVLLASWKQQLDRDVEALKIKANLHQLHIVLSHFGIECEGLETLCVKDQTLMNENAKKIIGWALSHHHMQNLEANPDSKLILSCENIHYGYGMLQSLQNESKGMKKSHKDIVTENNFEKRLLADVIPPSDINVTFDDIGALENVKDTLKELVMLPLQRPGLFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINLSMSKIMSKWFGEGEKYVKAVFSLASKAAPSVIFIDEADSMLGRRENPREHEAMRKMKNEFMVNWDGLRTKDSERVLVLAATNRPFDLDEAVIRRLPRRLMINLPDAPNRAKILKVILTKEELSPDVDLDAVASMTDGYSGSDLKNLCATAAHCPIKEILEKEKKERASALEEGRPAPALYNSGDIRSLNMGDFKHALQQVCASVSSESVNMTELVQWNELYGEGGSRVKKTPSYFM	1174

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g03104	1174	MobiDBLite	consensus disorder prediction	1	113	-	-
	Vifa4g03104	1174	MobiDBLite	consensus disorder prediction	1	22	-	-
	Vifa4g03104	1174	MobiDBLite	consensus disorder prediction	81	95	-	-
	Vifa4g03104	1174	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	868	1149	IPR027417	-
	Vifa4g03104	1174	Pfam	AAA+ lid domain	1063	1098	IPR041569	-
	Vifa4g03104	1174	Pfam	ATPase family associated with various cellular activities (AAA)	910	1039	IPR003959	GO:0005524\|GO:0016887
	Vifa4g03104	1174	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	336	1173	-	-
	Vifa4g03104	1174	CDD	FHA	134	232	-	-
	Vifa4g03104	1174	ProSitePatterns	AAA-protein family signature.	1013	1032	IPR003960	GO:0005524\|GO:0016887
	Vifa4g03104	1174	Gene3D	-	868	1149	IPR027417	-
	Vifa4g03104	1174	Gene3D	-	131	241	-	-
	Vifa4g03104	1174	SUPERFAMILY	SMAD/FHA domain	128	237	IPR008984	GO:0005515
	Vifa4g03104	1174	MobiDBLite	consensus disorder prediction	474	500	-	-
	Vifa4g03104	1174	Gene3D	-	1042	1136	-	-
	Vifa4g03104	1174	SMART	AAA_5	906	1043	IPR003593	GO:0016887
	Vifa4g03104	1174	MobiDBLite	consensus disorder prediction	474	493	-	-
	Vifa4g03104	1174	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	868	1044	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g03104	Vifa-Chr4	990181946	990192094	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g03104	905	1111	Calmodulin-binding Proteins	AT3G56690	36.967	4.14e-31	130

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g03104	-		-	psat:127074055	1952.95