Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03083 ATGGCGATGGTGACGACAAGAAGAAAAGAACAACATGGACTGGAGAATAACATAGGTGTATCTTTTCATGATTATACTTCATACCTGTCTTGGCCTGGTGCGCTTTCAGGTTTGATGTTGCTTAGTGGTTCCTCAGATTTCATGGATTTACAATGCTACAATGAGGTTGCAGCTTTGTTTATGCTTCTAAGATTTGATTTATTCATAATATATTCTAAACTGAGCAAAAATTTTGCAGCTTTGGGTTCTCTTAACAAACTTATTGAAGGATGTGGAACATCAATAACACCAGCACATGAAAAAATTGGTGTGGTTGATGAACAATGGATTGTTCATCAAACAATTCCTACTCTTGGTGAACGAGGAGAATATGATCATGGAAAAGACAAATATGATGCGTATGATTATGAACTTCGATCGTTTTCGGGACTACCTGATAACGGAACATTCACTATCGGCTTCACTCCATCAGACACTGATAATCGATTATTCACGTTAGGCATTTGGTTTTCTAGCCTTCCAGGAGATCGAACTTTCGTTTGGTCACCCAATAGAAACTCACCTACATCTCAAGAAGCAATTTTGGAGCTTGACACAACAGGAAACCTCGTCCTCATCGACAAAAAAGTCACCATATGGGCCTCAAACACATCAAATGCTAATGTAGAATCAGCAACCATGTCAGAATCTGGTAACTTCATCCTTCACAGCACAAACAACCACCCTATATGGCAGAGTTTTTCTCAACCTTCAAACACACTTCTCCCAAACCAGCCTCTAACAGTTTCTTCAGAATTAACATCATCAAAATCCTCATCTCATGGTGGCTACTATGCTCTCAAAATGCTTCAGCAACCAACTTCTTTAAGTCTTGCACTAACTTACAATCTTCCAGAAAGTTACCAAACTTTTGATGAAAATGAATCATATGCAAACTATTCTTATTGGCAAGGTCCTGATATTTCCAATGTAACCGGAGAAGTTATCGCGGTTTTAGATCAAGCCGGAAGCTTTGGAATTGTATATGGAAATTCATCTGATGGTGCAGTTTATGTTTATAAGAATGATAATGATGATGCAGGTTTAGCTTCTGCAATTCATCAATCTACACCGTTAACCGTTCTTAGGAGACTGACACTCGAAGAGAATGGAAATCTGAGGTTATACCGATGGGAAGACGTAAATGGATCGAAACAATGGGTGTCACAGTGGGCTGCAGTTTCAAATCCATGTGATATTGGTGGAATTTGTGGTAATGGAGTATGTAAATTGGATAAAACTAAGACTAATGCTTCTTGCACTTGTTTACCAGGAACTTCTAAACTAGGAAGAGATGGACAATGTTATGAGAATTCATCTCTGGTTGGAAAATGTACTAATGGAAAAAACGAAAACAAGACATCGAGTTTTAGAATTTCGACAGTGCAACAAACTAATTATTATTTTTCTGAATCTTCAATAATAGCTAATTATAGTGAGAGTGATGTTTCTTCTGTATCAAAATGCGGTGATGCATGTTTGTCCGATTGTGATTGTGTTGCTTCTGTTTATGGACTAAATGAAGAAAGACCTTTTTGTTGGGTGTTGAGGAGTTTAAGTTTCGGCGGTTTTGAAGATACGAGCTCTACTTTGTTTGTGAAGGTTCGAGCAAATAGTTCATGGACACCAGAAGGACAAGAGGGAAGGTCTAATAACAGTTCTTCTGATGGAATGGGGAGTGCTAAGGAAAAGGCTGTGATTATTCCAATTGTTCTAGGCATGATAGTTCTCATTATTTTACTCACTATGTTATTGTATTACAGTGTTCATAGAAAAAGAACTTTGAAAAGAGAGATGGAATGTTCATTGGTCTTATCAGGTGCTCCAGTGAATTTTACTTACCGCGCTTTGCAGATCAGGACAAGTAACTTTTCGCAGCTTCTAGGAACAGGTGGATTTGGAAGTGTGTATAAAGGAAGCTTAGGAGATGGTACCTTAGTCGCGGTGAAGAAACTTGATAAGATTTTGCCTCATGGAGAGAAAGAATTTATCACCGAAGTAAACACGATTGGCTCAATGCATCATATGAATTTGGTTCGTTTATGTGGTTTTTGTTCTGAGGGACCTCAGAGGCTTTTAGTTTATGAGTTCATGAAGAATGGTTCATTGGATCAGTGGATCTTCCCTTCGATTCGAGGACCAGATAGATTGCTCGATTGGCAAACTCGTTTTGATATAGCCAAAAATACTGCACAAGGGATTGCATACTTTCATGAGCAGTGTAGAAACAAGATAATACATTGTGACATCAAGCCAGAAAATATATTGTTAGATGAAAACTTTTGTCCCAAGGTATCTGATTTTGGACTTGCTAAATTGATGGCAAGGGAACATTCTCATGTAGGTAACAATGGTAAGAGGCACTAG 2406 0.382 MAMVTTRRKEQHGLENNIGVSFHDYTSYLSWPGALSGLMLLSGSSDFMDLQCYNEVAALFMLLRFDLFIIYSKLSKNFAALGSLNKLIEGCGTSITPAHEKIGVVDEQWIVHQTIPTLGERGEYDHGKDKYDAYDYELRSFSGLPDNGTFTIGFTPSDTDNRLFTLGIWFSSLPGDRTFVWSPNRNSPTSQEAILELDTTGNLVLIDKKVTIWASNTSNANVESATMSESGNFILHSTNNHPIWQSFSQPSNTLLPNQPLTVSSELTSSKSSSHGGYYALKMLQQPTSLSLALTYNLPESYQTFDENESYANYSYWQGPDISNVTGEVIAVLDQAGSFGIVYGNSSDGAVYVYKNDNDDAGLASAIHQSTPLTVLRRLTLEENGNLRLYRWEDVNGSKQWVSQWAAVSNPCDIGGICGNGVCKLDKTKTNASCTCLPGTSKLGRDGQCYENSSLVGKCTNGKNENKTSSFRISTVQQTNYYFSESSIIANYSESDVSSVSKCGDACLSDCDCVASVYGLNEERPFCWVLRSLSFGGFEDTSSTLFVKVRANSSWTPEGQEGRSNNSSSDGMGSAKEKAVIIPIVLGMIVLIILLTMLLYYSVHRKRTLKREMECSLVLSGAPVNFTYRALQIRTSNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDKILPHGEKEFITEVNTIGSMHHMNLVRLCGFCSEGPQRLLVYEFMKNGSLDQWIFPSIRGPDRLLDWQTRFDIAKNTAQGIAYFHEQCRNKIIHCDIKPENILLDENFCPKVSDFGLAKLMAREHSHVGNNGKRH 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03083 801 Gene3D Phosphorylase Kinase; domain 1 599 710 - -
Vifa4g03083 801 ProSiteProfiles Bulb-type lectin domain profile. 129 248 IPR001480 -
Vifa4g03083 801 ProSitePatterns Protein kinases ATP-binding region signature. 641 664 IPR017441 GO:0005524
Vifa4g03083 801 SUPERFAMILY alpha-D-mannose-specific plant lectins 178 252 IPR036426 -
Vifa4g03083 801 ProSiteProfiles Protein kinase domain profile. 635 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03083 801 Gene3D - 142 250 IPR036426 -
Vifa4g03083 801 Pfam S-locus glycoprotein domain 358 438 IPR000858 GO:0048544
Vifa4g03083 801 SMART serkin_6 635 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03083 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 758 770 IPR008271 GO:0004672|GO:0006468
Vifa4g03083 801 PANTHER OS07G0415500 PROTEIN 146 791 - -
Vifa4g03083 801 PIRSF SRK 139 797 IPR024171 GO:0004674
Vifa4g03083 801 Gene3D Transferase(Phosphotransferase) domain 1 711 800 - -
Vifa4g03083 801 SMART blect_4 129 250 IPR001480 -
Vifa4g03083 801 Pfam D-mannose binding lectin 178 265 IPR001480 -
Vifa4g03083 801 CDD B_lectin 144 250 IPR001480 -
Vifa4g03083 801 FunFam S-receptor-like serine/threonine-protein kinase 604 710 - -
Vifa4g03083 801 Pfam Protein kinase domain 638 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03083 801 FunFam Protein kinase superfamily protein 711 786 - -
Vifa4g03083 801 SUPERFAMILY Protein kinase-like (PK-like) 615 793 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03083 Vifa-Chr4 985930555 985934701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03083 573 794 Receptor kinase-like Gene Family AT5G45780 43.612 3.23e-47 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa4g03083 Pkinase 1.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03083 - - tpra:123904109 1196.8