Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03080 ATGGGAAAAGCATCACGCTGGTTTCGCGGTTTTCTCGGTCTAAAAAAACCGGAATACGCTTCAACCGATCAGAAACCGCCCAAAGAGAAACGGAGATGGAGTTTCGTCAAATCATACAGAGAAGAAGGACAACAACAACAACATCACAACAGCCACGTCCACGTCGACAACAATAACAACAACAAACAGGCCATCGCAGTCGCTGCTGCCACCGCCGCCGCTGCGGAGGCCGCCGTAGCCGCTGCTAAAGCCGCTGCCGACGTCGTGAGATTCAATAGCAGTAACGGCATCGTCCGGTTACGCGAACAATGGGCGGCCGTTAAGATCCAAGCCGCTTTTCGAGCAAGTTTGGCGAGGAAGGCACTGCGGGCATTAAAAGGGCTGGTGAAGCTCCAGGCTCTTGTGAGAGGGCACATTGAGAGGAAAAGAACAGCAGAGTGGCTCAAACGGATGCAATCACTTGTGCGGGCACAGGCACGATTTAATGCTGCACGTATCCTGCAAACATCACACTCTAATGTAAAATCATCTACACTCTATCTCCATGGGGGTCCAGCAACACCAGAGAAATCAGAAAGCCCTGTTAGATCTAGGAGCATGAAATCCGAACATTCACCGTTATTCAAGAGAAACGGTTCCAAATCATGTCTCCCATTCAGCGGCAATATATCAGAGAATCAGATAGACGAACAATCATGGAATAGAGTAAAGTCACTGATAAGATCATATAGCAGGAGTGATGAGAAAACTGAAAGGATTGTGGAAATTGATTCGGGAAAACAACACATAATAACCTCGAAGCGTAGAAACCTCTTTCACTCCATAAGTGATACTGATCATTATTATTATAGTCAGAATTTAACTCCTACAAAGGAATCAAAATCTCATCAATCTAGTCAAAGTCAATCATGTGAGGTTCAATCTTATTACAACCCGCATAAACTCAGCGAAGTCGAAGAGAATAGTCCTCAATTTTTATCATCTGCAACTTCAAAAGAGGATGGATACAAAAGAAGCCCTTTTACTCCTACAAAGAGTGATGGATCAAGAAGTTACCTTAGAGGCTATTCTGATTACCCAAGTTACATGGCATATACAGAGTCATCAAAGGCAAAAGTTAGATCCATGAGTGCACCAAAACAAAGGCCTCAACATGAGAAATCTAGTTCCTCTAATAGGTACTCACTGAATGGACATGACATTGCAAGATTGGCAGCACAGAGAAATTCTGCACTGCAAGCAAGTTTTGCAAGTAAAGGGTATCCAGGTTCTGGTCGTTTGGATAAGCTTGGAATGCCTGTGGGGTATAGATAA 1314 0.4444 MGKASRWFRGFLGLKKPEYASTDQKPPKEKRRWSFVKSYREEGQQQQHHNSHVHVDNNNNNKQAIAVAAATAAAAEAAVAAAKAAADVVRFNSSNGIVRLREQWAAVKIQAAFRASLARKALRALKGLVKLQALVRGHIERKRTAEWLKRMQSLVRAQARFNAARILQTSHSNVKSSTLYLHGGPATPEKSESPVRSRSMKSEHSPLFKRNGSKSCLPFSGNISENQIDEQSWNRVKSLIRSYSRSDEKTERIVEIDSGKQHIITSKRRNLFHSISDTDHYYYSQNLTPTKESKSHQSSQSQSCEVQSYYNPHKLSEVEENSPQFLSSATSKEDGYKRSPFTPTKSDGSRSYLRGYSDYPSYMAYTESSKAKVRSMSAPKQRPQHEKSSSSNRYSLNGHDIARLAAQRNSALQASFASKGYPGSGRLDKLGMPVGYR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03080 437 MobiDBLite consensus disorder prediction 194 208 - -
Vifa4g03080 437 Pfam IQ calmodulin-binding motif 129 143 IPR000048 GO:0005515
Vifa4g03080 437 Pfam IQ calmodulin-binding motif 104 123 IPR000048 GO:0005515
Vifa4g03080 437 Pfam Protein of unknown function (DUF4005) 322 402 IPR025064 -
Vifa4g03080 437 PANTHER IQ-DOMAIN 5-RELATED 1 397 - -
Vifa4g03080 437 MobiDBLite consensus disorder prediction 177 213 - -
Vifa4g03080 437 MobiDBLite consensus disorder prediction 317 351 - -
Vifa4g03080 437 ProSiteProfiles IQ motif profile. 102 130 IPR000048 GO:0005515
Vifa4g03080 437 Gene3D - 101 154 - -
Vifa4g03080 437 MobiDBLite consensus disorder prediction 317 353 - -
Vifa4g03080 437 MobiDBLite consensus disorder prediction 288 307 - -
Vifa4g03080 437 ProSiteProfiles IQ motif profile. 126 153 IPR000048 GO:0005515
Vifa4g03080 437 MobiDBLite consensus disorder prediction 415 437 - -
Vifa4g03080 437 MobiDBLite consensus disorder prediction 371 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03080 Vifa-Chr4 985823587 985826147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03080 103 437 IQD Protein Family AT4G23060 45.915 1.11e-67 221