LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g03076	ATGGAATTCTCTGTAAGAGCTGCGGAACTAACAACTCTATTAGAAAGTCGAATTACCAACTTTTACACAAATTTTCAAGTGGATGAGATCGCTCGAGTGGTCTCAGTTGGAGATGGGATTACACGTGTTTATGGATTAAACGAGATTCAAGCTGGGGAATTAGTTGAATTTTCCAGCGGTGTGAAAGGAATAACATTGAATCTTGAGAATGATAATGTCGGAATTATTGTCTTTGGTAGTAATACCTCTATCAAAGAAGGAGATCTTGTCAAACATAATGGATATATTGTGGATGTTCCTGCGGGAAAGTCTATGCTAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATAGAACGTAAATCAGTTCACGAGACTATGCAAACTGGGTTAAAAGCGGTAGATAGCCTAGTTCCTATAGGCTGTGGTCAACGAGAACTTATAATCAGGGACCGAAAAACTGGAAAAACATCTATAGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCGTTTCGGTTCCAGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACACATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACAACCAGGCTGCGCAGGTAGCTTGACTTCCTTACCCGTCATTGAAACACAAGCTGGAGACATATCGGCCTATATTCCCACCAATGTTATCTCCATTACGGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGTGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTTCCGCTCAGTTGAAAGCTATGAAACAAGTCAGCGGTAGTTTAAAATTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGCTCAGACCTTGATGCTGTGACTCAGGCGTTACTCAATAGAGCTGTCAATGGATTCTGTGATCGAATGCCATTAGACAAAATAGCTCAATATGAAAGAGACATTCTATGCACTATAAAACAAGAATTACTACAATCACTAAAAGGTGGACTAACTGGCGAAAGAAAGATAGAACCGGATGCATTCTTAAAAGAAAAAGCTTTGTCTTTAATTTAA	1287	0.4204	MEFSVRAAELTTLLESRITNFYTNFQVDEIARVVSVGDGITRVYGLNEIQAGELVEFSSGVKGITLNLENDNVGIIVFGSNTSIKEGDLVKHNGYIVDVPAGKSMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHETMQTGLKAVDSLVPIGCGQRELIIRDRKTGKTSIAIDTILNQKQMNSRATSEKANALEYSILVAATVSVPAPLQFLAPYSGCAMGEYFRDNGMHTLIIYDDLSKQAVAYRQMSLLLRRQPGCAGSLTSLPVIETQAGDISAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSSAQLKAMKQVSGSLKLELAQYREVAAFAQFGSDLDAVTQALLNRAVNGFCDRMPLDKIAQYERDILCTIKQELLQSLKGGLTGERKIEPDAFLKEKALSLI	428

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g03076	428	Pfam	ATP synthase alpha/beta family, nucleotide-binding domain	269	323	IPR000194	GO:0005524
	Vifa4g03076	428	Pfam	ATP synthase alpha/beta family, beta-barrel domain	29	91	IPR004100	GO:0046034\|GO:1902600
	Vifa4g03076	428	Gene3D	-	194	269	-	-
	Vifa4g03076	428	Gene3D	-	97	193	IPR027417	-
	Vifa4g03076	428	ProSitePatterns	ATP synthase alpha and beta subunits signature.	314	323	IPR020003	GO:0005524
	Vifa4g03076	428	SUPERFAMILY	C-terminal domain of alpha and beta subunits of F1 ATP synthase	332	403	-	-
	Vifa4g03076	428	Gene3D	-	3	95	IPR023366	-
	Vifa4g03076	428	FunFam	ATP synthase subunit alpha, mitochondrial	96	200	-	-
	Vifa4g03076	428	PANTHER	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	4	200	IPR005294	GO:0015986\|GO:0045261\|GO:0046933
	Vifa4g03076	428	FunFam	ATP synthase subunit alpha	3	95	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g03076	Vifa-Chr4	985643724	985645248	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g03076	34	329	Primary Pumps ATPases(2)	AT4G38510	22.254	5.55e-12	65.5

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g03076	K02132		-	gmx:15308543	701.434

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