Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03076 ATGGAATTCTCTGTAAGAGCTGCGGAACTAACAACTCTATTAGAAAGTCGAATTACCAACTTTTACACAAATTTTCAAGTGGATGAGATCGCTCGAGTGGTCTCAGTTGGAGATGGGATTACACGTGTTTATGGATTAAACGAGATTCAAGCTGGGGAATTAGTTGAATTTTCCAGCGGTGTGAAAGGAATAACATTGAATCTTGAGAATGATAATGTCGGAATTATTGTCTTTGGTAGTAATACCTCTATCAAAGAAGGAGATCTTGTCAAACATAATGGATATATTGTGGATGTTCCTGCGGGAAAGTCTATGCTAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATAGAACGTAAATCAGTTCACGAGACTATGCAAACTGGGTTAAAAGCGGTAGATAGCCTAGTTCCTATAGGCTGTGGTCAACGAGAACTTATAATCAGGGACCGAAAAACTGGAAAAACATCTATAGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCGTTTCGGTTCCAGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACACATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACAACCAGGCTGCGCAGGTAGCTTGACTTCCTTACCCGTCATTGAAACACAAGCTGGAGACATATCGGCCTATATTCCCACCAATGTTATCTCCATTACGGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGTGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTTCCGCTCAGTTGAAAGCTATGAAACAAGTCAGCGGTAGTTTAAAATTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGCTCAGACCTTGATGCTGTGACTCAGGCGTTACTCAATAGAGCTGTCAATGGATTCTGTGATCGAATGCCATTAGACAAAATAGCTCAATATGAAAGAGACATTCTATGCACTATAAAACAAGAATTACTACAATCACTAAAAGGTGGACTAACTGGCGAAAGAAAGATAGAACCGGATGCATTCTTAAAAGAAAAAGCTTTGTCTTTAATTTAA 1287 0.4204 MEFSVRAAELTTLLESRITNFYTNFQVDEIARVVSVGDGITRVYGLNEIQAGELVEFSSGVKGITLNLENDNVGIIVFGSNTSIKEGDLVKHNGYIVDVPAGKSMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHETMQTGLKAVDSLVPIGCGQRELIIRDRKTGKTSIAIDTILNQKQMNSRATSEKANALEYSILVAATVSVPAPLQFLAPYSGCAMGEYFRDNGMHTLIIYDDLSKQAVAYRQMSLLLRRQPGCAGSLTSLPVIETQAGDISAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSSAQLKAMKQVSGSLKLELAQYREVAAFAQFGSDLDAVTQALLNRAVNGFCDRMPLDKIAQYERDILCTIKQELLQSLKGGLTGERKIEPDAFLKEKALSLI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03076 428 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 269 323 IPR000194 GO:0005524
Vifa4g03076 428 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 91 IPR004100 GO:0046034|GO:1902600
Vifa4g03076 428 Gene3D - 194 269 - -
Vifa4g03076 428 Gene3D - 97 193 IPR027417 -
Vifa4g03076 428 ProSitePatterns ATP synthase alpha and beta subunits signature. 314 323 IPR020003 GO:0005524
Vifa4g03076 428 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 332 403 - -
Vifa4g03076 428 Gene3D - 3 95 IPR023366 -
Vifa4g03076 428 FunFam ATP synthase subunit alpha, mitochondrial 96 200 - -
Vifa4g03076 428 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 4 200 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa4g03076 428 FunFam ATP synthase subunit alpha 3 95 - -
Vifa4g03076 428 Pfam ATP synthase alpha/beta chain, C terminal domain 330 371 IPR000793 GO:0015986
Vifa4g03076 428 CDD ATP-synt_F1_alpha_N 29 91 - -
Vifa4g03076 428 CDD ATP-synt_F1_alpha_C 334 405 IPR000793 GO:0015986
Vifa4g03076 428 Gene3D - 270 398 - -
Vifa4g03076 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 329 IPR027417 -
Vifa4g03076 428 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 12 96 IPR036121 GO:0046034|GO:1902600
Vifa4g03076 428 CDD F1-ATPase_alpha_CD 96 326 IPR033732 GO:0032559
Vifa4g03076 428 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 198 268 IPR000194 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03076 Vifa-Chr4 985643724 985645248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03076 34 329 Primary Pumps ATPases(2) AT4G38510 22.254 5.55e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03076 K02132 - gmx:15308543 701.434