Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03058 ATGTCTTCTTCTTCTTCTACTTCCAAAAGACACCCAACATACCACGGAATTCGAAGCCGGGGAGGAAAATGGGTGACTGAAATCCGTGAGCCTCGCAAAACCAACCGCATATGGCTAGGCACATTCTCCACTCCTGAGATGGCAGCCGCAGCTTACGACGTTGCGGCTTTGGCTCTCAAAGGTCAGGACGCAGTGCTCAACTTTCCTGACATGGCTAATATGTATCCAGTCCCGGCTTCCAATTCTTCCGATGACATACGCAATGCTGCCACTGCTGCAGCTGAATTGATGAACGCTGAATACAGCAATGATGCTGGTTTTGAAGTTAATCCTCAAACTGATCAGTTTCTTGATGAAGAAGCTATATTCTCCATGCCAAGTTTGATGGTAGCAATGGCTGAGGGAATGATGCTTTCACCCCCCAGAATGGATCCACCACCGTCTGATTACACACAAGAATATTACACTGTGGGACAAAGTTTGTGGAACCATTTTTGA 498 0.4699 MSSSSSTSKRHPTYHGIRSRGGKWVTEIREPRKTNRIWLGTFSTPEMAAAAYDVAALALKGQDAVLNFPDMANMYPVPASNSSDDIRNAATAAAELMNAEYSNDAGFEVNPQTDQFLDEEAIFSMPSLMVAMAEGMMLSPPRMDPPPSDYTQEYYTVGQSLWNHF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03058 165 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
Vifa4g03058 165 Pfam AP2 domain 15 61 IPR001471 GO:0003700|GO:0006355
Vifa4g03058 165 SMART rav1_2 13 75 IPR001471 GO:0003700|GO:0006355
Vifa4g03058 165 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Vifa4g03058 165 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 163 IPR045277 GO:0003700
Vifa4g03058 165 FunFam Ethylene-responsive transcription factor 2 13 70 - -
Vifa4g03058 165 CDD AP2 14 70 IPR001471 GO:0003700|GO:0006355
Vifa4g03058 165 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03058 Vifa-Chr4 984377673 984378170 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03058 3 164 AP2-EREBP Transcription Factor Family AT5G52020 50.279 1.46e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g03058 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03058 - - gmx:100778793 207.223