Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03057 ATGTCTTCTTCTTCTTCTACTTCCAAAAGACACCCAACATACCGCGGAATTCGAAGCCGTGGAGGAAAATGGGTGACTGAAATCCGTGAGCCTCGCAAAACCAACCGCATATGGCTAGGCACATTCTCCACTCCTGACATGGCTGCCGCAGCTTACGACGTTGCCGCTTTGGCTCTCAAAGGTCCCGACGCAGTGCTCAACTTTCCTGACAGAGCTTGCATGTATCCAGTCCCGCCTTCCAATTCTGCCGATGACATACGTAAAGCTGCCACTGCTGCAGCTGAATTCATGAATGCTGAATACCGCAATGATGCTGGTTTTGAAGTTAATCCTTCGTATCAAGCTCATCAATTTCTTGATGAGGAAGCTATATTCTCCATGCCAAGTTTGATGGTAGCAATGGCGGAGGGAATGATGCTTTCACCTCCCAGAATGAATCCACCACCCTCTGATTACTCACATGATCAATATTACACTATGGGACAAAGTTTGTGGAACCATTTTTGA 507 0.4714 MSSSSSTSKRHPTYRGIRSRGGKWVTEIREPRKTNRIWLGTFSTPDMAAAAYDVAALALKGPDAVLNFPDRACMYPVPPSNSADDIRKAATAAAEFMNAEYRNDAGFEVNPSYQAHQFLDEEAIFSMPSLMVAMAEGMMLSPPRMNPPPSDYSHDQYYTMGQSLWNHF 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03057 168 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Vifa4g03057 168 SMART rav1_2 13 75 IPR001471 GO:0003700|GO:0006355
Vifa4g03057 168 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 166 IPR045277 GO:0003700
Vifa4g03057 168 Pfam AP2 domain 13 61 IPR001471 GO:0003700|GO:0006355
Vifa4g03057 168 FunFam Ethylene-responsive transcription factor 2 12 70 - -
Vifa4g03057 168 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
Vifa4g03057 168 CDD AP2 14 70 IPR001471 GO:0003700|GO:0006355
Vifa4g03057 168 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Vifa4g03057 168 PRINTS Ethylene responsive element binding protein signature 51 71 IPR001471 GO:0003700|GO:0006355
Vifa4g03057 168 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03057 Vifa-Chr4 983751899 983752405 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03057 3 167 AP2-EREBP Transcription Factor Family AT5G52020 50.556 1.72e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g03057 AP2 3.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03057 - - vra:106768065 196.052