Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03055 ATGTCTTCTTCTTCTACTTCCAAAAGACACCCAACATACCACAGAATTCGAAGCCGTGGAGGAAAATGGGTCACTGAAATCCGTGAGCCTCGCAAAACCAACCGCATATGGCTAGGCACATTCTCCACTCCTGAGATGGTTGTCGCAGCTTACGACGTTGCGACTTTGGCTCTCAAAGGTCCGAACGCAGTGCTCAACTTTCCTGACAGAGCTTGCATGTATCCAGTCCCGCCTTCCAATTCTGCCGATGACATTCGTAACGCTGCCATTGCTGCAGCTGAATTCATGAACGCTGAATACCGCAATGATGCTGGTTTTGAAGTTAATCCTTCGTATCAAGCTGATCAGTTTCTTGATGAGGAAGCTATATTCTCCATGCCAAGTTTGATGGTAGCAATGGCGGAGGGGATGATGCTTTCACCTCCCAGAATGAATCCACCACCCTCTGATTACTCACATGATCAATATTACACTATGGGACAAAGTTTGTGGAACCATTTTTGA 504 0.4663 MSSSSTSKRHPTYHRIRSRGGKWVTEIREPRKTNRIWLGTFSTPEMVVAAYDVATLALKGPNAVLNFPDRACMYPVPPSNSADDIRNAAIAAAEFMNAEYRNDAGFEVNPSYQADQFLDEEAIFSMPSLMVAMAEGMMLSPPRMNPPPSDYSHDQYYTMGQSLWNHF 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03055 167 ProSiteProfiles AP2/ERF domain profile. 1 68 IPR001471 GO:0003700|GO:0006355
Vifa4g03055 167 Pfam AP2 domain 17 60 IPR001471 GO:0003700|GO:0006355
Vifa4g03055 167 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 165 IPR045277 GO:0003700
Vifa4g03055 167 SUPERFAMILY DNA-binding domain 17 69 IPR016177 GO:0003677
Vifa4g03055 167 SMART rav1_2 15 74 IPR001471 GO:0003700|GO:0006355
Vifa4g03055 167 CDD AP2 21 69 IPR001471 GO:0003700|GO:0006355
Vifa4g03055 167 Gene3D AP2/ERF domain 12 69 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03055 Vifa-Chr4 983193403 983193906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03055 2 166 AP2-EREBP Transcription Factor Family AT5G52020 47.778 4.55e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g03055 AP2 0.00014 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03055 - - gmx:100778793 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03055 4 983193403 983193906 Vifa4g03055 4 983193403 983193906 ECH