LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g03054	ATGTCTTCTTCTTCTTCTTCTACTTCCAAAAGACACCCAACATACCACGGAATTCGATGCCGTGGAGGAAAATGGGTGACTGAAATCCGTGAGCCTCGCAAAACCAACCGCATATGGCTAGGCACATTCTCCACTCCTCAGATGGCAGCCGCAGCTTACGACGTTGCCGCTTTGGCTCTCAAAGGTCCCGACGCAGTGCTCAACTTTCCTGACAGAGCTTGCATCTATCCAGTCCCGCCTTCCAATTCTGCCGATGACATACGTAACGCTGCTACTGCTGCAGCTGAATTCATGAACGCTGAATACCGCAATGATGCTGGTTTTGAAGTTAATCCTTCGTATCAAGCTCATCAGTTTCTTGACGAGGAAGCTATATTCTCCATGCCAAGTTTGATGGTAGCAATGGCCGAGGGAATGATGCTTTCACCTCCCAGAATGAATCCACCACCCTCTGATTACTCGCATGATCAATATTACACGATGGGACAAAGTTTGTGGAACCATTTTTGA	510	0.4784	MSSSSSSTSKRHPTYHGIRCRGGKWVTEIREPRKTNRIWLGTFSTPQMAAAAYDVAALALKGPDAVLNFPDRACIYPVPPSNSADDIRNAATAAAEFMNAEYRNDAGFEVNPSYQAHQFLDEEAIFSMPSLMVAMAEGMMLSPPRMNPPPSDYSHDQYYTMGQSLWNHF	169

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g03054	169	ProSiteProfiles	AP2/ERF domain profile.	14	70	IPR001471	GO:0003700\|GO:0006355
	Vifa4g03054	169	Pfam	AP2 domain	15	62	IPR001471	GO:0003700\|GO:0006355
	Vifa4g03054	169	SUPERFAMILY	DNA-binding domain	14	71	IPR016177	GO:0003677
	Vifa4g03054	169	CDD	AP2	15	71	IPR001471	GO:0003700\|GO:0006355
	Vifa4g03054	169	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	9	167	IPR045277	GO:0003700
	Vifa4g03054	169	Gene3D	AP2/ERF domain	14	71	IPR036955	GO:0003700\|GO:0006355
	Vifa4g03054	169	SMART	rav1_2	14	76	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g03054	Vifa-Chr4	983175224	983175733	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g03054	4	168	AP2-EREBP Transcription Factor Family	AT5G52020	50.000	6.77e-45	145

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vifa4g03054		AP2	4.9e-09	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g03054	-		-	gmx:100778793	202.216