Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03053 ATGAAATCATCACTTAGTGACTCTAGTTACGGACTCAAATCAGAGTACTCCTACAGCTCAACCTCATCATTATCGGAAACAAGTTGCCATGAAGAAATCTTGTTAGCGTCGGAGCAACCAAAGAGGCGTGCCGGGAGACGAAAATTCAAGGAGACAAGACATCCAGTATACAGAGGAGTACGAAGGAGGAAGAACAACAAGTGGGTTTGCGAGGTGCGTGTTCCAAACGACAAGTCCAGGAGGATCTGGTTGGGAACATATCCAACGCCTGAGATGGCGGCACGTGCACACGATGTTGCTGCGCTGGCACTTCGTGGCAAATCAGCTTGTCTCAACTTTGCTGACTCGGTTTGGAGATTGCCAATACCTGTGTCGACTAACGTGACGGAGATTAGGAAAATGGCGGCGGAGGCTGCTTTTGCATTTGCGGTTGAGAGCAGTAATGAACAACTTATGATAACTAGTGTTTCCATATTTGAGGAGCAGGAGGTGTTGCATGATTGGTTCCGGAGTATGGCAGATGAGCCTTTACGATCTCCGACGAGTCCATTTATGATATGTGGTAGGGATCACTGGAATAATTTTGATCAAGTTGAATTTGAGATGTCTTTGTGGAGTTTTACCATCTAA 630 0.4619 MKSSLSDSSYGLKSEYSYSSTSSLSETSCHEEILLASEQPKRRAGRRKFKETRHPVYRGVRRRKNNKWVCEVRVPNDKSRRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSVWRLPIPVSTNVTEIRKMAAEAAFAFAVESSNEQLMITSVSIFEEQEVLHDWFRSMADEPLRSPTSPFMICGRDHWNNFDQVEFEMSLWSFTI 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03053 209 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Vifa4g03053 209 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Vifa4g03053 209 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 206 IPR045277 GO:0003700
Vifa4g03053 209 ProSiteProfiles AP2/ERF domain profile. 56 114 IPR001471 GO:0003700|GO:0006355
Vifa4g03053 209 FunFam Ethylene-responsive transcription factor 2 55 115 - -
Vifa4g03053 209 Gene3D AP2/ERF domain 56 115 IPR036955 GO:0003700|GO:0006355
Vifa4g03053 209 Pfam AP2 domain 55 106 IPR001471 GO:0003700|GO:0006355
Vifa4g03053 209 CDD AP2 57 116 IPR001471 GO:0003700|GO:0006355
Vifa4g03053 209 SUPERFAMILY DNA-binding domain 56 116 IPR016177 GO:0003677
Vifa4g03053 209 SMART rav1_2 56 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03053 Vifa-Chr4 982687706 982688428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03053 30 207 AP2-EREBP Transcription Factor Family AT1G63030 51.667 1.99e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g03053 AP2 3.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03053 - K09286 gmx:100795696 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03053 4 982687706 982688428 Vifa4g03053 4 982687706 982688428 ECH
Vifa4g03053 4 982687706 982688428 Vifa1g07851 1 1225828851 1225829558 PCT