Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03043 ATGGTGAGAGGAAAAACACAACTGAAGCTAATCGAAAATGAGTCCTACAGACAAGTAACTTTCTCAAAGAGAAGAAATGGGTTGCTCAAAAAGGCTTTTGAACTATCAGTTCTTTGTGATGCTGAAGTGGCACTCATCGTCTTCTCTTCCACAGGGAAACTCCATGAGTTCTCCAGTTCAAGTATAAATAAAACAGTAGAACGCTATCAACGGAAAGTCAAGGACTTGGCTCTTAGCACCAAAGAAATCCAAGAAAACACACAGGTTACTCCTTCATCGAACTTGCAATGTGATATCAACACAACAAAGAAGTTGGAGCAACTAGAACTTTACAAAAGGAAGCTGGTGGGAGATGAATTGGATACATGTGGTATTGAAGAATTACAAAAGATTGAAAATCAACTGGAATGCAGCTTAAGCAAAATTAGGGCAAGAAAGAATCAACTCTTCAGGGAGCAAATTGAAAAGCTAAAAAAACAGGAATGGTGCCTACTTGATGAAAATAGACGCTTACGTGAGCAATGTGGAATTGGACAACAAGATATAGAACTGTTAACAGAAAGTGAGCTAGGTGAGGAGGTGGAGACGGAATTGTTCATAGGGCGACCTGAGAAACGAATGAATTGA 627 0.3939 MVRGKTQLKLIENESYRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSSTGKLHEFSSSSINKTVERYQRKVKDLALSTKEIQENTQVTPSSNLQCDINTTKKLEQLELYKRKLVGDELDTCGIEELQKIENQLECSLSKIRARKNQLFREQIEKLKKQEWCLLDENRRLREQCGIGQQDIELLTESELGEEVETELFIGRPEKRMN 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03043 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa4g03043 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa4g03043 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa4g03043 208 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Vifa4g03043 208 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Vifa4g03043 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa4g03043 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa4g03043 208 Coils Coil 125 148 - -
Vifa4g03043 208 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Vifa4g03043 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Vifa4g03043 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Vifa4g03043 208 Coils Coil 66 86 - -
Vifa4g03043 208 Pfam K-box region 102 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g03043 208 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g03043 208 Coils Coil 154 174 - -
Vifa4g03043 208 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vifa4g03043 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03043 Vifa-Chr4 981871060 981880963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03043 1 206 MADS-box Gene Family AT4G22950 54.884 5.43e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa4g03043 K-box 4.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03043 - - psat:127074094 330.102