Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03024 ATGGGGAGACAACCTTGTTGTGACAAACTTGGTGTGAAGAAAGGTCCTTGGACTGCTGATGAAGATAAGAAACTCATCAATTTCATTCTTACAAATGGACAATGTTGTTGGCGCGCTGTGCCTAAACTCGCTGGGCTTAGGCGTTGCGGGAAGAGTTGTCGCCTTCGTTGGACTAATTATCTTCGTCCTGATTTAAAGAGAGGCCTCCTCAATGAAACAGAGGAGCAGCTTGTTATTGATCTCCATGCCCGTCTTGGTAACAGGTGGTCGAAGATTGCTTCGAGATTACCTGGAAGAACAGATAATGAAATAAAAAATCACTGGAACACTCACATCAAGAAAAAGCTAATTAAGATGGGAATTGATCCCATTACTCATGAGCCTCTGAACAAACAAGCATCATCCAATGATACTTCATCCCCTGCAGAGAATTTGTCACAGCCTGACAATAGCCATGAAGTGAAGGAAAGTGATGGAATTCTGAACTCAGAAAACACTAATTCAAGCTCACCCCCTACAGAAAATTCTTGTGGAGAAGAATCTCTTTTGCTAGATAGTCTCTGTAGTGATGATTCTCTAATGAATAGCTTATGGTTAGATGAAACACCATTGGTGGAAGCACTTTGGGAAATGGACACTACACTTATAGCAGAGATAGAGACAGAGAATACAAAAAATGAGATGAATTTTGTGCCTTCTTGGGAGGATAATTGTGGTTGGTTATTGGATTGTCAAGACTTTGGTATTCATGATTTTGGATTTAATTATTTCAATGAGATAGAAACTATAGGGACAAAGGAAAATCAACATTAG 813 0.3985 MGRQPCCDKLGVKKGPWTADEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNETEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTHIKKKLIKMGIDPITHEPLNKQASSNDTSSPAENLSQPDNSHEVKESDGILNSENTNSSSPPTENSCGEESLLLDSLCSDDSLMNSLWLDETPLVEALWEMDTTLIAEIETENTKNEMNFVPSWEDNCGWLLDCQDFGIHDFGFNYFNEIETIGTKENQH 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03024 270 Gene3D - 71 157 - -
Vifa4g03024 270 FunFam MYB transcription factor 11 67 - -
Vifa4g03024 270 MobiDBLite consensus disorder prediction 128 148 - -
Vifa4g03024 270 CDD SANT 16 61 IPR001005 -
Vifa4g03024 270 MobiDBLite consensus disorder prediction 126 179 - -
Vifa4g03024 270 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa4g03024 270 Gene3D - 12 67 - -
Vifa4g03024 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa4g03024 270 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa4g03024 270 MobiDBLite consensus disorder prediction 160 179 - -
Vifa4g03024 270 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa4g03024 270 SMART sant 66 114 IPR001005 -
Vifa4g03024 270 SMART sant 13 63 IPR001005 -
Vifa4g03024 270 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa4g03024 270 Pfam Myb-like DNA-binding domain 72 111 IPR001005 -
Vifa4g03024 270 CDD SANT 71 112 IPR001005 -
Vifa4g03024 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa4g03024 270 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 206 - -
Vifa4g03024 270 FunFam MYB transcription factor 70 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03024 Vifa-Chr4 972654929 972656018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03024 1 254 MYB Transcription Factor Family AT4G22680 58.647 4.27e-100 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g03024 Myb_DNA-binding 9.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03024 K09422 - gmx:100786965 435.647