Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03017 ATGATTCTCTATGCTGGTGAGAGCACAACTCTCATCATAGCACTCTTGATAATAACCGCAGTAACTTTGTATATTTACCTCTTCTTCAAATCCAAATCCCAAAATTTACCGCCAGGCCCATCAGGCTTTCCTATCTTCGGGAATCTTCTATCTCTAGAACCAGAACTCCACACTTACTTCGCCGGGCTGGCCCAAACTCACGGCCCGATTTTCAAGCTCTGGCTCGGTAGCAAACTCGGAATCGTGGTGAGTTCACCTTCCACGGCGCGTGAGATTCTAAAAGAACACGACACAGTTTTTGCCAACCGCGACGTCCCTGCCGCAGGTAGAGCAGCAACTTACGGTGGCTTAGATATAGTATGGACCCCGTATGGACCAGAGTGGAGGATGCTGAGGAAAATTTGCGTGTTGAAGATGCTTAGCAACACAACTCTTGATTCTGTTTACGAGCTCCGTCGCGGCGAGGTTCGGAGAACGGTTGGGTATATTCATGACCGGGTTGGATCAAAGGTGAATATTGGAGAGCAAGTTTTTTTAACTGTATTGAACGTGATTACGAATATGATGTGGGGTGCGGCAGTGAAAGGGGAAGAGAGGGAGAGTTTAGGGGCGGAGTTCAGGGAGGCAGTGGCGGAGATGACACAACTTTTGGGGAAGCCGAATCTGTCGGACTTTTTCCCCAGGTTGGCCCGGTTTGATTTACAAGGTGTGGTGAAAGAGATGAATGCTTTGGTTCCTCGTTTTGATAGAATATTTGAGAAGATGATTAGCGAACGTGTGAAGAAGAAGGAAGAGAAAGGAAAAGAGAATGAGAGTAAAGATTTTCTTCAGTTTTTGTTGAATTTGGAAGAAGAGGGTGATTCAAAGACGCCATTCACAAGCACTCACATTAAGGCACTTCTCATGGACATGGTGGTAGGTGGATCAGACACATCTTCTAACACAATTGAGTTTGCTATGGCGGAAATGATGAACAAGCCCGAAGTGTTGAGGAAGGTTCAAGAGGAATTAGAAACTGTGGTTGGAAAAGATAACTTAGTAGAAGAGTTTCATATTCATAAGTTACCCTATTTACATGCAGTGATGAAAGAAACCCTTCGTTTGCACCCGGTGCTTCCGCTTATGGTTCCTCATTGTCCAAGTGAAACGACCAACGTTGGAGGCTACACAATTCCGGAGGGATCTCGTGTGTTTGTGAACGTTTGGGCTATTCATAGAGATCCTTCAATTTGGGAGAATCCACTAGAATTTGATCCTGCAAGGTTCTTGGATGGGAAATGGGATTACAGTGGGAATGACTTCAATTATTTTCCATTTGGTTCTGGGAGAAGGATTTGTGCTGGGATTGCAATGGCTGAGAGGACTGTTTTGTATTATACAGCTACGCTTGTTCACTTGTTTGATTGGACAATACCCGAAGGAGAAAATCTGGAGGTTTCAGAGAAATTTGGTATTGTATTGAAAAAGAAAACACCTCTGATTGCTATTCCCACGCCACGATTGTCCAACCCGGATTTTTATAGAGAGAATTGA 1533 0.4455 MILYAGESTTLIIALLIITAVTLYIYLFFKSKSQNLPPGPSGFPIFGNLLSLEPELHTYFAGLAQTHGPIFKLWLGSKLGIVVSSPSTAREILKEHDTVFANRDVPAAGRAATYGGLDIVWTPYGPEWRMLRKICVLKMLSNTTLDSVYELRRGEVRRTVGYIHDRVGSKVNIGEQVFLTVLNVITNMMWGAAVKGEERESLGAEFREAVAEMTQLLGKPNLSDFFPRLARFDLQGVVKEMNALVPRFDRIFEKMISERVKKKEEKGKENESKDFLQFLLNLEEEGDSKTPFTSTHIKALLMDMVVGGSDTSSNTIEFAMAEMMNKPEVLRKVQEELETVVGKDNLVEEFHIHKLPYLHAVMKETLRLHPVLPLMVPHCPSETTNVGGYTIPEGSRVFVNVWAIHRDPSIWENPLEFDPARFLDGKWDYSGNDFNYFPFGSGRRICAGIAMAERTVLYYTATLVHLFDWTIPEGENLEVSEKFGIVLKKKTPLIAIPTPRLSNPDFYREN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03017 510 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 439 448 IPR017972 GO:0005506|GO:0016705
Vifa4g03017 510 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 PRINTS E-class P450 group I signature 359 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 PRINTS E-class P450 group I signature 436 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 PRINTS E-class P450 group I signature 446 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 PRINTS E-class P450 group I signature 400 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 FunFam Cytochrome P450 - like protein 26 494 - -
Vifa4g03017 510 PRINTS P450 superfamily signature 360 371 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 PRINTS P450 superfamily signature 437 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 PRINTS P450 superfamily signature 446 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 PANTHER OS08G0547900 PROTEIN 12 507 - -
Vifa4g03017 510 Coils Coil 507 510 - -
Vifa4g03017 510 Pfam Cytochrome P450 37 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 CDD CYP76-like 64 497 - -
Vifa4g03017 510 Gene3D Cytochrome P450 29 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g03017 510 SUPERFAMILY Cytochrome P450 37 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03017 Vifa-Chr4 971450603 971452348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03017 14 507 Cytochrome P450 AT4G12300 61.000 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03017 - - gmx:100787507 791.956