Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03005 ATGGAGGCTAGCGGCGGTGTTAGTGGTGGCGTTACGGTGGTGGGATCGGATGCTCCGTCGGAGTACCATGTAGCAGCAAGAATCGACAAGCAAACTCCGACCGGTGGATCGGCAGTTCAGTTTACTACAGCGGTCCAAGGAAATTTTCAGCCGCAGAATCCGCCGCATACGGCGGCGGTTGCGGTGACGGTGTCGCCGGCAGACACGACGGTTCCTGAGAAGAAGAAGAGAGGCCGGCCGAGAAAGTATGCAGCGGACGGTTCGGTGAGGATGGCGCTGTCTCCGAAGCCGATATCCTCGTCTGCTCCGTTGCCGCCGGTGATCGATTTTACGGCGGAGAAGCGTGCGAAAGTGCGGCCAGTTAGCTCGGTGAGCAAAGCGAAATTCGAGTTGGAAAATATAGGTGAATGGGTCCCTTTCTCAGCTGCTTCAAATTTCACACCTCACATCATTACTGTTAATACTGGAGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCTCGAGCTTTATGCGTTCTTTCAGCCAATGGTGTCATAAAAAGTGTCACACTTCGTCAGCCCGATGCTTCTGGGGGCACATTGACATATGAGGGACTATTTGAAATTCTTTCTTTATCTGGTTCATTCATGCCAAACGACAGCGGAGGAACGCGAAGCAGATCAGGTGGCATGAGTGTTTCTTTATCAAGTCCTGATGGCCGTGTTGTTGGTGGAGGAGTAGCTGGTCTATTGGTTGCTGCAAGTCCAGTGCAGGTAGTGGTTGGTAGTTTTATGGCAGGAAACCAACATGAGCAGAAGGCAAGGAATCAGAAACATGATGTGATATCAGCTGTGACAACTGCTGCTGTTGTTCCCATCCCTACTCTTGATCCAATACCTATTCTATCATCAGCAACTTCCTTCCGTGGAGATAATTGGTCTGCTGTGCAGGCACCGGAAGCCAAAGACAAGCCAGTTTCTGCTGTGCAGGCACCGGAAGCCAAAGACAAGCCAGTTTCTGACATTAACGTGTCACTTCCCGGCGGTTAA 1041 0.5091 MEASGGVSGGVTVVGSDAPSEYHVAARIDKQTPTGGSAVQFTTAVQGNFQPQNPPHTAAVAVTVSPADTTVPEKKKRGRPRKYAADGSVRMALSPKPISSSAPLPPVIDFTAEKRAKVRPVSSVSKAKFELENIGEWVPFSAASNFTPHIITVNTGEDVTMKVISFSQQGPRALCVLSANGVIKSVTLRQPDASGGTLTYEGLFEILSLSGSFMPNDSGGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAASPVQVVVGSFMAGNQHEQKARNQKHDVISAVTTAAVVPIPTLDPIPILSSATSFRGDNWSAVQAPEAKDKPVSAVQAPEAKDKPVSDINVSLPGG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03005 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 45 286 IPR039605 GO:0003680
Vifa4g03005 346 MobiDBLite consensus disorder prediction 311 346 - -
Vifa4g03005 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 261 IPR005175 -
Vifa4g03005 346 MobiDBLite consensus disorder prediction 67 86 - -
Vifa4g03005 346 ProSiteProfiles PPC domain profile profile. 143 284 IPR005175 -
Vifa4g03005 346 CDD DUF296 147 238 IPR005175 -
Vifa4g03005 346 Gene3D - 148 280 - -
Vifa4g03005 346 FunFam AT-hook motif nuclear-localized protein 1-like 148 278 - -
Vifa4g03005 346 MobiDBLite consensus disorder prediction 70 84 - -
Vifa4g03005 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 143 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03005 Vifa-Chr4 964126469 964128462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03005 1 321 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.102 2.99e-114 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03005 - - gmx:100801730 459.529