Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03004 ATGGCAAAAGGTAGCTCCAGCAACAACTATGAAGAGGCTAGAAAACAAAGATTGGAACAAAACAATAAGAAAATTGCGGATTTAGGGATTTCAAAGATTTCTAAACAATTGACTAAAATCGGAAGTTCTTCAAACAAGTCACAGAAACGCCGTGTCAAACGAGAATTAAAGACTAATCATGTAGCGGAACAAAGGTGCTCTTCTCGTGCAAGAAACAAAGCTCCTTCATACAGTGAAGAGTTTCCTACAGACCTTCCTCATAAGAGTTCACGTCTACGGAAGAGGTCAAGGTCAAGTCCATCATCATGGGGAAGTTACATTGCGAGGCCACTCGATGAAATCAAAGAAGCTACGAAACAAGAAAGAGACCGTGCTTATAAGGCTGCAGAGAAACTGGAAATCAATTTGCAGTCTCCAAATCCATCATTTGCCAAGTCAATGGTCCGGTCTCATGTTTATAGCTGTTTTTGGTTGGGTCTTCCTAGTAGATTTTGTCAGGACCATCTTCCAAAAGAGGGAAGTGGGCTAAGTGGTGGCTGGAGAGCATTTGCATTGCAACATAAATTGGATGATGGTGATGCACTTGTTTTTGAATTGGTTCAAGCAAACAGATTTAAGATTTATATTGTTAGTGCATTTCCAAATATTAGTGAAAAAGAGGAAGAAGAAAACAATACTTTGGTGGAAGAAGAAAATATGCACACATCCAAAACAACAAAAAAAATGAAGGCTGCAAGTAACCATGAATCAGCATCGAAGAAGACTAAAAAGCGAAAACATGCCATTAAAACTAAGGAATCAGAGAATTCTGAAGAAAGTCTGCCAGAAAGTAACATTGACAAAGAGTCCAAACCTCAGAGGGTAAATTCTAGTAGAAAAACTAAATCTTCTCAGAAAGAAATGCAAAAGATATCTGAAGTACCAAGTACTCCTGAGCCAAAAGAGGAACCACAGATTGAAGTTGTGAAACCAAAGGAAGCTATAAAGAAAACTAGATCTTCTCAGAGGAAAATGCAAAAGATATCTGAAGTACCAATTACTCCTGAGACAAAAGAGGAATCACAGATTGAAGTTGTGAAACCAAAGGAAGCTATAAAGAAAACTAGATCTTCTCAGAGAAAAGTGCAAAAGATATCTGAAGTATCTACTACTCTTGAGCTAAAAGGTGAAGCACAAGTTGAAACTGTGAAACCAAAGGAAGCTACAAAGTTGTCAAAGAAGACAAGGAAGTCCAAAGAAGGTAACTTGAGCAAGAAGGAAGAACATGTTCAGGATGATGCGATTGAGTCAATGAAAGATGTTCAGGATGATGCGATTGAGTCAATGAAAGATGTTCAGGATGATGCGATTGAGTCAATGAAAGATAAGCCAGATGAAAAACCAAGCAAAGAAGTTTCACAAAAACCTCGAAAAAAAGCAGCTGTTAAGTTTTTCAGTAGGAAAACATCAATTTCCAATTTAATATGCGTGGTTAAAAAGTCTTAG 1485 0.3764 MAKGSSSNNYEEARKQRLEQNNKKIADLGISKISKQLTKIGSSSNKSQKRRVKRELKTNHVAEQRCSSRARNKAPSYSEEFPTDLPHKSSRLRKRSRSSPSSWGSYIARPLDEIKEATKQERDRAYKAAEKLEINLQSPNPSFAKSMVRSHVYSCFWLGLPSRFCQDHLPKEGSGLSGGWRAFALQHKLDDGDALVFELVQANRFKIYIVSAFPNISEKEEEENNTLVEEENMHTSKTTKKMKAASNHESASKKTKKRKHAIKTKESENSEESLPESNIDKESKPQRVNSSRKTKSSQKEMQKISEVPSTPEPKEEPQIEVVKPKEAIKKTRSSQRKMQKISEVPITPETKEESQIEVVKPKEAIKKTRSSQRKVQKISEVSTTLELKGEAQVETVKPKEATKLSKKTRKSKEGNLSKKEEHVQDDAIESMKDVQDDAIESMKDVQDDAIESMKDKPDEKPSKEVSQKPRKKAAVKFFSRKTSISNLICVVKKS 494
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03004 494 Gene3D - 117 173 IPR015300 -
Vifa4g03004 494 Gene3D - 174 213 IPR015300 -
Vifa4g03004 494 SMART B3_2 143 213 IPR003340 GO:0003677
Vifa4g03004 494 ProSiteProfiles B3 DNA-binding domain profile. 176 213 IPR003340 GO:0003677
Vifa4g03004 494 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 173 213 IPR044837 -
Vifa4g03004 494 MobiDBLite consensus disorder prediction 219 251 - -
Vifa4g03004 494 MobiDBLite consensus disorder prediction 316 337 - -
Vifa4g03004 494 Coils Coil 115 135 - -
Vifa4g03004 494 MobiDBLite consensus disorder prediction 23 103 - -
Vifa4g03004 494 MobiDBLite consensus disorder prediction 219 355 - -
Vifa4g03004 494 MobiDBLite consensus disorder prediction 392 471 - -
Vifa4g03004 494 CDD B3_DNA 141 209 IPR003340 GO:0003677
Vifa4g03004 494 SUPERFAMILY DNA-binding pseudobarrel domain 136 210 IPR015300 -
Vifa4g03004 494 MobiDBLite consensus disorder prediction 391 472 - -
Vifa4g03004 494 MobiDBLite consensus disorder prediction 262 300 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa4g03004 Vifa-Chr4 964093250 964097221 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03004 10 210 B3 DNA Binding Superfamily AT5G58280 44.758 8.72e-59 194
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03004 - - cam:101498339 459.914