Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02986 ATGAACACATTTTCACATGTACCTCCGGGTTTTCGTTTTCACCCGACCGATGAAGAACTAGTGGATTATTATCTCAGGAAGAAGGTATCGTCTAAAAAGATCGATCTAGATGTCATCAAAGACGTCGATCTTTATAAAATCGAACCATGGGATCTTCAAGAATTATGCAAAATAGGAAGTGATGAACAAAATGATTGGTATTTCTTTAGTCATAAAGATAAGAAGTATCCGACAGGAACTCGAACCAATAGAGCAACAAAAGCAGGATTCTGGAAAGCCACTGGAAGAGATAAGGCAATATATTCAAAACAGTTCCTAGTTGGAATGAGAAAAACTCTTGTGTTTTACAAAGGACGTGCCCCAAATGGACAGAAATCTGATTGGATCATGCATGAGTATCGTCTTGAAACCAATCAAAATGGAACTTCTCAGGAAGAAGGTTGGGTTGTTTGCAGGGTATTCAAAAAGAGAATGACAACAGTACAGAAAATGAGTGAGTATGATCAATCACCATGCAACTGGTATGATGATCAAGTTTCCTTCATGCCTGATCTTGAATCTCCAACCAGAACCAACTCTCACCCAAACTACACTTCATCATACCAATCATGCAAACCAGAACTTGAACTAATGCAATACAACATAATCCCAAACCATCAATACCATGATCTTCCACATCTTCAAAGCCCTAAAATCGTTCCCTCAGTTATTACCCCTTATACTCATGCTCATGCAAACAATAACAATATTGCACTCACTCAACAACAGCAGCAACAACAGATGCAGTATTTGCAGTACCATCAACAAAATCTTCACTCGATTTACGGTGGAAACAGCAGTGCTGGGAATGTTAATGATGAACAAGTCACTGATTGGAGAGTTCTTGACAAGTTTGTTGCTTCTCAGCTTAGTCAAGAAGATAACAATAATAATAGTAATAATAATAATAATCAAGATCATGTTTCTGATAAACAAACTAGTTCTTTCTCCAATGCAGCTATACTTCAAGTTGCGGAACAAATTACTCTTCTTGCTAATGAATCCAAAAAGAATGAAGTTTCTGAGGAACATGCTTCAACATCTACCTCCAGTTGCCACATGGAACTCTGGAAGTGA 1116 0.3772 MNTFSHVPPGFRFHPTDEELVDYYLRKKVSSKKIDLDVIKDVDLYKIEPWDLQELCKIGSDEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKQFLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNQNGTSQEEGWVVCRVFKKRMTTVQKMSEYDQSPCNWYDDQVSFMPDLESPTRTNSHPNYTSSYQSCKPELELMQYNIIPNHQYHDLPHLQSPKIVPSVITPYTHAHANNNNIALTQQQQQQQMQYLQYHQQNLHSIYGGNSSAGNVNDEQVTDWRVLDKFVASQLSQEDNNNNSNNNNNQDHVSDKQTSSFSNAAILQVAEQITLLANESKKNEVSEEHASTSTSSCHMELWK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02986 371 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Vifa4g02986 371 FunFam NAC domain-containing protein 16 160 - -
Vifa4g02986 371 MobiDBLite consensus disorder prediction 357 371 - -
Vifa4g02986 371 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Vifa4g02986 371 MobiDBLite consensus disorder prediction 304 327 - -
Vifa4g02986 371 MobiDBLite consensus disorder prediction 348 371 - -
Vifa4g02986 371 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Vifa4g02986 371 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Vifa4g02986 371 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02986 Vifa-Chr4 956598389 956601104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02986 1 371 NAC Transcription Factor Family AT1G12260 57.258 1.33e-137 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa4g02986 NAM 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02986 - - gmx:100783529 494.967