Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02983 ATGTCCTCCTCTTCTTTATCCTTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTTCACTGCAACATTTGTGACACCATTCTTGCTGTGAGTGTTCCTTGCACTAGCTTGTTCAAGACTGTTACTGTGAGATGTGGTCACTGCACTAATCTCCTTCCTGTTAACATGCGTGCACTGCTTCTTCCATCTCCTAATCAGTTTCATCTTGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTGCAGGAGGAGATGCCAAACCAAGTTCCAAATTTCATGATGAACCTCACAAACACATCAAATGAGTTCTCTATGCCTCCCAGGACTGTTGCTGATGAGCTTCCAAGGCCACCTATCATAAACAGACCTCCAGAGAAAAGACAGAGAGTTCCTTCAGCATACAACCGCTTCATCAAAGATGAGATCCAACGCATTAAGTCTGTCAATCCTGATATTACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGGAGATGGTGGTCAGTCTCTGATGAAAGATGGGTTTTATGCTTCTGCTAATCTTGGTGTTTCCCCATACTAA 648 0.4522 MSSSSLSLDHLPPSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPTHNLLQEEMPNQVPNFMMNLTNTSNEFSMPPRTVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQEGGDGGQSLMKDGFYASANLGVSPY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02983 215 SUPERFAMILY HMG-box 120 169 IPR036910 -
Vifa4g02983 215 MobiDBLite consensus disorder prediction 109 129 - -
Vifa4g02983 215 FunFam Axial regulator YABBY 121 192 - -
Vifa4g02983 215 CDD HMG-box_SF 130 166 - -
Vifa4g02983 215 PANTHER PROTEIN YABBY 6-RELATED 1 186 IPR006780 GO:0007275
Vifa4g02983 215 Pfam YABBY protein 13 176 IPR006780 GO:0007275
Vifa4g02983 215 Gene3D High mobility group box domain 121 172 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02983 Vifa-Chr4 955507434 955509291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02983 24 213 C2C2-YABBY Transcription Factor Family AT4G00180 58.962 3.37e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vifa4g02983 YABBY 2.1e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02983 K25796 - gmx:100798441 386.341