Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02974 ATGGATTTGAAGCCTTCTCATGCTTCTCCAATTCGTAGTGATCCTGTTCCTACCAACAAGTCAAGGCTTGGAATCCATTCTAGTTTGTTAGCTTGTTCGCAGCAAGATTCACCACTCTCTCCAGGGAAGTTCCCAAAATCCAATTCAAAGAAAAACATGGGAGGTCTTGATGATGTTAGGTCTAATGGTTGGTTGGATGCTATGAAAGCATCTTCGCCTCCGAGGAAAAAGTCTATACATAAAGCTTCAAGTGCTCAAGTTGCTTCATTTGACTACGACAGTGAAGATTATAATTTATGGATGCAAGGATATCCTTCAGCACTAGAAGCTTTTGAGAAAATCGTTGACTTTGGAAAGGATAAGAAGATTGCAATGTTTCTTGATTATGATGGCACACTTTCACCTATAGTAGAAGATCCAGATTGTGCTTTCATGTCTGAACCTATGCGAAAAACTGTGAGAAGTGTGGCAAAGTATTTCCCAACAGCAATCATTAGTGGAAGAAGTCGTGACAAGGTTTTTGATTTAGTTAAACTAACAGAACTCTACTACGCCGGTAGTCACGGGATGGACATTATTGGCCCTGTTAGTGACACCGTGTCCATAAACCATCCAAATTGTGTTAAGTCTACTGACCATGAGGGAAAGGAGACAATTCTCTTTCAGCCGGCAAGAGAATTCCTTCCTATGATTGATGAGGTTTTTAAAACCCTCGTCGAGATTACTAAAGATATAGAAGGCGCAAAAGTTGAAAATCACAAGTTTTGCGCTTCTGTACATTACCGTAATGTAGAAGAGAATAATTGGACAATGATCGGTCAACGTGTCCACGATATGTTAAAAAATTACCCTCGTTTACGATCAACTCATGGACGAAAGGTTTTAGAAATTCGCCCTGTAATTGACTGGAACAAAGGAAAAGCTGTTGAATTTTTACTTGAATCACTAGGGTTAACTGATAGAAATGATGTACTTCCCATATATATTGGAGATGATAAAACTGATGAAGATGCATTTAAGGTACTGAGGGAGAGTAATCTAGGTTATGGGATATTGGTTTCATCAGTGGGAAAAGAGAGCAATGCTTTTTACTCTCTCAGAGACACCAATGAGGTTATGAAATTTCTCCAACTCTTGGTGAATTGGAAGACGGAGGAAGAAACAAAGCATGGGAAGAAATAA 1182 0.3917 MDLKPSHASPIRSDPVPTNKSRLGIHSSLLACSQQDSPLSPGKFPKSNSKKNMGGLDDVRSNGWLDAMKASSPPRKKSIHKASSAQVASFDYDSEDYNLWMQGYPSALEAFEKIVDFGKDKKIAMFLDYDGTLSPIVEDPDCAFMSEPMRKTVRSVAKYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSDTVSINHPNCVKSTDHEGKETILFQPAREFLPMIDEVFKTLVEITKDIEGAKVENHKFCASVHYRNVEENNWTMIGQRVHDMLKNYPRLRSTHGRKVLEIRPVIDWNKGKAVEFLLESLGLTDRNDVLPIYIGDDKTDEDAFKVLRESNLGYGILVSSVGKESNAFYSLRDTNEVMKFLQLLVNWKTEEETKHGKK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02974 393 NCBIfam trehalose-phosphatase 121 380 IPR003337 GO:0003824|GO:0005992
Vifa4g02974 393 SUPERFAMILY HAD-like 124 382 IPR036412 -
Vifa4g02974 393 NCBIfam HAD-IIB family hydrolase 125 343 IPR006379 -
Vifa4g02974 393 CDD HAD_TPP 124 374 - -
Vifa4g02974 393 Gene3D - 123 213 IPR023214 -
Vifa4g02974 393 Gene3D - 224 393 IPR023214 -
Vifa4g02974 393 FunFam Trehalose 6-phosphate phosphatase 230 389 - -
Vifa4g02974 393 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 43 390 IPR044651 GO:0004805|GO:0005992
Vifa4g02974 393 MobiDBLite consensus disorder prediction 12 47 - -
Vifa4g02974 393 Pfam Trehalose-phosphatase 126 369 IPR003337 GO:0003824|GO:0005992
Vifa4g02974 393 FunFam Trehalose 6-phosphate phosphatase 224 300 - -
Vifa4g02974 393 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02974 Vifa-Chr4 951624528 951626793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02974 117 379 Trehalose Biosynthesis Gene Families AT1G70290 26.408 1.20e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02974 K01087 - zju:107430298 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02974 4 951624528 951626793 Vifa4g02974 4 951624528 951626793 ECH