LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g02932	ATGAGTTCAGTTTCCTCGCAGCGCATGTTCCAGCTCAAGCTCGACCCTTTAACTGGTAACTCTGAATGGGTCATCATCGAGGAAGAAGACGGCGACGAACAAACCTTCCACCAACCTCTTCTCGCCACGACGTCGTATTTGGACATGCTCAACGATTCTACCAGAAACACTGCATTTCGCCAAGCCATTGAAAAAACCATCACCAAACCTTGCCACGTTCTCGATATCGGTGCTGGAACTGGGTTGCTTTCTATGATGGCGTCTCGAGCTATGGGTGGGAAAGGAACGGTAACGGCATGTGAGTCCTATCTTCCTATGGTGAAGTTGATGAAGAAGGTTATGCGCCTTAATGAGATAGAAGGAAGAATCGAAGTTATCAATAAGCATTCTGATGAACTCACAGTTGGTCTTGATATATCTTCACGCGCTGATGTTCTTGTGAGCGAGATATTAGATTCAGAACTATTGGGTGAGGGGCTTATACCAACCCTACAACATGCACATGACAATTTGTTGGTGGAAAACCCTCTGACTGTACCTTATCGAGCAACTACCTATGGACAGGTAGTTGAGAGCAAGTACTTATGGCAATTGCATGATTTGAATAGCAATGAGACTGGTTCATATGATGGCATTCAACTTGCCCCTCCTGGACTTGAAAGTGTTTTAAGTGTAAAACGTCAGCAATATGCAATGCATTGCGATTCAATAGGAGAAGAACTGAAACCGCTTTCAGAACCCTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTATGGAGAAACTGAGCTGCGCATAAAGGCAACCGGTGATGGTAGAGTTCACGCTGTTGTCTCTTGGTGGGAACTTCAACTTGATCGTGAAGGGACAATTTATTATTCCACTGCTCCTGGGTGGATAAGATCAACAATAGCTACATGTCCTGTTGATTGGTGTGACCACTGGAAACAGTGTGTTTGGTTTGTTCCAGGAAGCGGTATATCAGTATTCAAAGGAGAAGAAGTTTATTTACATGCTTCTCATAATGATATCAGTATCTCATATAACTTAGATACACAAGTGTCAAGATCTGAGGTTTTGCATCATGGATTAACGCCTGGAGATTTTCAGCTTGTGCTTCCGCCAGAAAGGACTGCAATCTATGGAGATAAAGGATGGAGGCTTTCAATGTTGAAAGCAATAGAGAATGTGGGAAGAAGTTGCTCATTATGCTTGGTAGCAGATGATAGTGTATATTTACCTCTTCTCCTGGCAAAGCTTTCAAAAGCACCACATGTAATATCATCTTTTCCGGGGCTGAAGGAAAGGGGACTCCAATATTTGCAAGCTGCTGCCCGTGCAAATAATCTGTCACCTAATTGCGTAAAAGTGGTTGAAAAAGGGGTGAAAAAGTTAACCATGCATGATACAGACCAGAAAAAGGTTGACCTGTTAATAGCAGAACCTTTCTATTTTGGACAAGATGGCATGCTTCCGTGGCAGAACCTGCGGTTTTGGAAGGATCGTACAACACTCGATTATATCCTCTCCAAAGATGCTATAATAGTTCCCAATAAAGGAATTTTGAGGGCTTGTGCCATCTATCTTCCTGATCTTTGGAAAAGTCGTTGCTGCTTGAGTGAGATAGAAGGTTTTGACCATTCTGGGGTAAACACTACATTAGGAGCGTGCGGTCATCTACCTGAATCGGAAGAGGGTCCTTGTCTACCTTTTTTTGTTTGGCAGTGTGGAGAATTCGATGTGCTTAGTGAAACATTTGATGTGATGGAGTTTGATTTCACAAAACAAATAGGCCAATGTCAAGGAAAGTCCCAGGTTAAATTCACCAAGACTGGAGTATGTCATGGGTTTGTGTTGTGGATTGACTGGGTGATGGATTCTCAGAGTTCTGTTGTCATATCCACTGGTCCAGATAAAAGATACTGGAAACAGGGAATAAAGCTTCTTGCAACACCTAGAACTGTAGGACCCCAAGGATTGACAAATCCCCAAGCATGTTGCTCTGCAGCTCTTGAAGCATTTTTTGATCCATCAAATGGGGAACTCAAAATTAAACTTGATTTCTTATGA	2079	0.4257	MSSVSSQRMFQLKLDPLTGNSEWVIIEEEDGDEQTFHQPLLATTSYLDMLNDSTRNTAFRQAIEKTITKPCHVLDIGAGTGLLSMMASRAMGGKGTVTACESYLPMVKLMKKVMRLNEIEGRIEVINKHSDELTVGLDISSRADVLVSEILDSELLGEGLIPTLQHAHDNLLVENPLTVPYRATTYGQVVESKYLWQLHDLNSNETGSYDGIQLAPPGLESVLSVKRQQYAMHCDSIGEELKPLSEPFKIFEFDFWKRPESYGETELRIKATGDGRVHAVVSWWELQLDREGTIYYSTAPGWIRSTIATCPVDWCDHWKQCVWFVPGSGISVFKGEEVYLHASHNDISISYNLDTQVSRSEVLHHGLTPGDFQLVLPPERTAIYGDKGWRLSMLKAIENVGRSCSLCLVADDSVYLPLLLAKLSKAPHVISSFPGLKERGLQYLQAAARANNLSPNCVKVVEKGVKKLTMHDTDQKKVDLLIAEPFYFGQDGMLPWQNLRFWKDRTTLDYILSKDAIIVPNKGILRACAIYLPDLWKSRCCLSEIEGFDHSGVNTTLGACGHLPESEEGPCLPFFVWQCGEFDVLSETFDVMEFDFTKQIGQCQGKSQVKFTKTGVCHGFVLWIDWVMDSQSSVVISTGPDKRYWKQGIKLLATPRTVGPQGLTNPQACCSAALEAFFDPSNGELKIKLDFL	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g02932	692	Gene3D	-	524	691	-	-
	Vifa4g02932	692	FunFam	Protein arginine N-methyltransferase 1.6	524	691	-	-
	Vifa4g02932	692	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	46	343	IPR029063	-
	Vifa4g02932	692	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	23	350	IPR025799	GO:0016274\|GO:0018216
	Vifa4g02932	692	FunFam	Protein arginine N-methyltransferase 1.6	182	366	-	-
	Vifa4g02932	692	Gene3D	Vaccinia Virus protein VP39	39	181	IPR029063	-
	Vifa4g02932	692	Gene3D	-	182	365	-	-
	Vifa4g02932	692	FunFam	Protein arginine N-methyltransferase 7	372	520	-	-
	Vifa4g02932	692	PANTHER	PROTEIN ARGININE N-METHYLTRANSFERASE	443	662	IPR025799	GO:0016274\|GO:0018216
	Vifa4g02932	692	FunFam	Protein arginine N-methyltransferase	39	181	-	-
	Vifa4g02932	692	PIRSF	Arg_N-mtase	7	691	IPR014644	GO:0006479\|GO:0008168
	Vifa4g02932	692	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	360	692	IPR025799	GO:0016274\|GO:0018216
	Vifa4g02932	692	Pfam	Ribosomal protein L11 methyltransferase (PrmA)	61	153	-	-
	Vifa4g02932	692	Gene3D	Vaccinia Virus protein VP39	373	520	IPR029063	-
	Vifa4g02932	692	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	441	660	IPR029063	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g02932	Vifa-Chr4	940255885	940270945	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g02932	46	186	C2H2 Transcription Factor Family	AT3G12270	32.000	8.10e-12	66.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g02932	K11438		-	gmx:100785846	1127.46