Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02914 ATGGAGAGACACAAATGCAAGCTATGTTCAAGAACATTTAGCAATGGAAGAGCACTTGGTGGACACATGAAGGCTCATCTTGCCATAGCTAAGTCTCAGAAACAACAAACTGTTTTGTTTTCGAGCTCTTCTTCAGAATCGGAACAAGAACAAGAACGAGAACGAGAACGAGAACGAGAGAAAACTCTGGTTAGTTATGGTTTGAGAGAGAATCCAAAGAAGAGTCTGAAAATTGCAGATCCTGGATTTTCTTCTGTTATTGTTCAAGATAGAGAAAGTGAGACTGAGTCAAAGAATAATCCGACTCGTCAACAACGATCCAAACGAATCAGGAAACACATCAGCAGCATTAACAACAACAACAACAACAACCAGAAATTTGAATTGAAGAAAGCAAAGATGAATTTCATGGTGCCAACAGCAACGTTGTTGCCATTCATTGAGAGTACTGAGCCTGTGAGTTCAGTTTCTGATACTTCTCCTGAAGAAGATGTTGCTATGTGTCTGATGATGCTGTCAAGAGACAAATGGAACAGGAGGAACAACATGAACAATGTGGTGGAACAAGAAGAAGAGGGATCGGTGAAGAAAGTAGCGAACACGAAGTTGTTGAAACGAGTTCGTGGAAAGCATTTTTGTGAAAATTGTAGGAAAATGTTCCGGTCTTCAAGAGCATTAGGAAGCCACACAAGTGTTTGTTGTCGCGGTGAAGCCAAGAATGGCAACGATAACCATGATAAGATTTTTGAATGTCCATTTTGTTTTAAGGTGTTTGGTTCTGGTCAAGCACTTGGTGGTCACAAGAGATCTCATTTGATTCCTTCATCATCTAACACCACACCTAATGTTAATCTTTCAGCTACATTCAAAGAGACTTTCATAGATCTCAATTTGCCAGCTCCCGTTGAAGAAGACGATCTTAGCGTTGTTTCATATGCCTAA 942 0.4013 MERHKCKLCSRTFSNGRALGGHMKAHLAIAKSQKQQTVLFSSSSSESEQEQEREREREREKTLVSYGLRENPKKSLKIADPGFSSVIVQDRESETESKNNPTRQQRSKRIRKHISSINNNNNNNQKFELKKAKMNFMVPTATLLPFIESTEPVSSVSDTSPEEDVAMCLMMLSRDKWNRRNNMNNVVEQEEEGSVKKVANTKLLKRVRGKHFCENCRKMFRSSRALGSHTSVCCRGEAKNGNDNHDKIFECPFCFKVFGSGQALGGHKRSHLIPSSSNTTPNVNLSATFKETFIDLNLPAPVEEDDLSVVSYA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02914 313 SMART c2h2final6 211 231 IPR013087 -
Vifa4g02914 313 SMART c2h2final6 4 26 IPR013087 -
Vifa4g02914 313 SMART c2h2final6 249 271 IPR013087 -
Vifa4g02914 313 MobiDBLite consensus disorder prediction 33 64 - -
Vifa4g02914 313 Pfam C2H2-type zinc finger 249 272 - -
Vifa4g02914 313 Pfam C2H2-type zinc finger 3 28 - -
Vifa4g02914 313 MobiDBLite consensus disorder prediction 88 110 - -
Vifa4g02914 313 ProSitePatterns Zinc finger C2H2 type domain signature. 251 271 IPR013087 -
Vifa4g02914 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 271 IPR013087 -
Vifa4g02914 313 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 311 IPR044303 GO:0006355
Vifa4g02914 313 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Vifa4g02914 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Vifa4g02914 313 Gene3D Classic Zinc Finger 174 278 - -
Vifa4g02914 313 MobiDBLite consensus disorder prediction 47 64 - -
Vifa4g02914 313 SUPERFAMILY beta-beta-alpha zinc fingers 3 271 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02914 Vifa-Chr4 936186124 936187065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02914 1 310 C2H2 Transcription Factor Family AT3G60580 36.364 3.31e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa4g02914 zf-C2H2_6 1.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02914 - - tpra:123884584 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07719 1 1200446902 1200447627 Vifa4g02914 4 936186124 936187065 PCT