Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02896 ATGGCACCCTGCAGAAAAAAAGATGGACCAACTAAGAAAACAATGAATAGAGGATCTTGGACCCCAGACGAAGATCAAAAGCTAGCTCATTGCATTCGAACTCATGGTGCCAAGAAATGGAAAACTGTTTCTGCCAAATCAGTTATCTTTTTTGCAGGTTTGAATAGGTGTGGAAAGAGTTGTAGGTTAAGATGGTTGAATTATCTTAGACCCAATATTAAGAGAGGCAACATTTCAGATGAAGAAGAGGATTTGATTCTTAGGCTTCACAAACTTCTAGGAAACAGGTGGTCTTTGATAGCTGGGAGGCTTCCGGGACGAACAGACAATGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGCTAGTCACATTGAGGAAAAACCAGAAACTTCCACAACACAAGAAACTATAGTTCAAGACAATATTATGGGGGATAGTGTTATGTTAGAGAATAAATATTCAATTAGTGGAAGTGTCGATTCAGATGTTCTCTTTGATGTGAATGAATTCTTAGACTTTTCTGCTGATGAACCATATGAGTTTGATTGGGTGAATAAACTCTTGGAATTTGAGCAGATTCAGTTTCCTGAGAACACAAATATCTGA 615 0.3724 MAPCRKKDGPTKKTMNRGSWTPDEDQKLAHCIRTHGAKKWKTVSAKSVIFFAGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKASHIEEKPETSTTQETIVQDNIMGDSVMLENKYSISGSVDSDVLFDVNEFLDFSADEPYEFDWVNKLLEFEQIQFPENTNI 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02896 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Vifa4g02896 204 SMART sant 16 71 IPR001005 -
Vifa4g02896 204 SMART sant 74 122 IPR001005 -
Vifa4g02896 204 MobiDBLite consensus disorder prediction 1 22 - -
Vifa4g02896 204 FunFam MYB-related transcription factor 16 74 - -
Vifa4g02896 204 Pfam Myb-like DNA-binding domain 17 69 IPR001005 -
Vifa4g02896 204 Pfam Myb-like DNA-binding domain 75 120 IPR001005 -
Vifa4g02896 204 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Vifa4g02896 204 SUPERFAMILY Homeodomain-like 15 116 IPR009057 -
Vifa4g02896 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 69 IPR017930 -
Vifa4g02896 204 CDD SANT 19 69 IPR001005 -
Vifa4g02896 204 Gene3D - 78 145 - -
Vifa4g02896 204 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 132 - -
Vifa4g02896 204 Gene3D - 10 75 - -
Vifa4g02896 204 ProSiteProfiles Myb-like domain profile. 12 69 IPR001005 -
Vifa4g02896 204 CDD SANT 79 120 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02896 Vifa-Chr4 929850486 929851304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02896 4 173 MYB Transcription Factor Family AT5G52600 48.837 3.53e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g02896 Myb_DNA-binding 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02896 K09422 - gmx:100799575 263.462